Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049704 |
| length | 933 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 7 |
| gene id | XLOC_025161 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 14641962 ~ 14688110 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-061215-116 | Is expressed in diencephalon; gut; hatching gland; polster; and yolk syncytial layer. Orthologous to human TTC39A (tetratricopeptide repeat domain 39A). |
| ensembl_id | ENSDART00000146492 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052622 | lncRNA | upstream | 386928 | 14277650 ~ 14287841 (+) | True | XLOC_025151 |
| TCONS_00052331 | lncRNA | upstream | 420004 | 14251244 ~ 14254765 (+) | True | XLOC_025149 |
| TCONS_00052330 | lncRNA | upstream | 426231 | 14244198 ~ 14248538 (+) | False | XLOC_025148 |
| TCONS_00049683 | lncRNA | upstream | 426619 | 14242119 ~ 14248150 (+) | False | XLOC_025148 |
| TCONS_00052329 | lncRNA | upstream | 472250 | 14201043 ~ 14202519 (+) | True | XLOC_025147 |
| TCONS_00052623 | lncRNA | downstream | 545349 | 15229952 ~ 15231838 (+) | True | XLOC_025164 |
| TCONS_00052624 | lncRNA | downstream | 587343 | 15271946 ~ 15272293 (+) | False | XLOC_025165 |
| TCONS_00049715 | lncRNA | downstream | 820581 | 15505184 ~ 15506157 (+) | False | XLOC_025169 |
| TCONS_00049716 | lncRNA | downstream | 820674 | 15505277 ~ 15506157 (+) | True | XLOC_025169 |
| TCONS_00052332 | lncRNA | downstream | 832949 | 15517552 ~ 15517899 (+) | True | XLOC_025170 |
| TCONS_00049702 | mRNA | upstream | 36370 | 14611299 ~ 14638399 (+) | True | XLOC_025160 |
| TCONS_00049699 | mRNA | upstream | 68651 | 14571813 ~ 14606118 (+) | False | XLOC_025159 |
| TCONS_00049701 | mRNA | upstream | 68923 | 14581643 ~ 14605846 (+) | True | XLOC_025159 |
| TCONS_00049700 | mRNA | upstream | 93559 | 14571839 ~ 14581210 (+) | False | XLOC_025159 |
| TCONS_00049698 | mRNA | upstream | 113673 | 14558188 ~ 14561096 (+) | True | XLOC_025158 |
| TCONS_00049705 | mRNA | downstream | 83761 | 14768364 ~ 15058463 (+) | False | XLOC_025162 |
| TCONS_00049706 | mRNA | downstream | 83761 | 14768364 ~ 15058464 (+) | True | XLOC_025162 |
| TCONS_00049707 | mRNA | downstream | 492134 | 15176737 ~ 15186292 (+) | True | XLOC_025163 |
| TCONS_00049708 | mRNA | downstream | 587340 | 15271943 ~ 15284693 (+) | False | XLOC_025165 |
| TCONS_00049709 | mRNA | downstream | 594413 | 15279016 ~ 15284095 (+) | True | XLOC_025165 |
| TCONS_00049690 | other | upstream | 275117 | 14399225 ~ 14399652 (+) | True | XLOC_025154 |
| TCONS_00049684 | other | upstream | 429985 | 14244666 ~ 14244784 (+) | True | XLOC_025148 |
| TCONS_00049675 | other | upstream | 817053 | 13848226 ~ 13857716 (+) | False | XLOC_025143 |
| TCONS_00049661 | other | upstream | 1268231 | 13406451 ~ 13406538 (+) | False | XLOC_025131 |
| TCONS_00049660 | other | upstream | 1268446 | 13406226 ~ 13406323 (+) | True | XLOC_025130 |
| TCONS_00049719 | other | downstream | 1006700 | 15691303 ~ 15719823 (+) | True | XLOC_025174 |
| TCONS_00049721 | other | downstream | 1071120 | 15755723 ~ 15774178 (+) | False | XLOC_025176 |
| TCONS_00049736 | other | downstream | 1688409 | 16373012 ~ 16373127 (+) | True | XLOC_025188 |
| TCONS_00049741 | other | downstream | 1884662 | 16569265 ~ 16588629 (+) | True | XLOC_025190 |
| TCONS_00049746 | other | downstream | 1984000 | 16668603 ~ 16678650 (+) | False | XLOC_025192 |
