RNA id: TU1867935


Basic Information

Item Value
RNA id TU1867935
length 264
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1632594
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48572170 ~ 48572433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatatattaaaaataaaaaacagaaaaaccttatttacataagtattcagaccatttgctatgagacttgaaattgagctcaggtgcatcctgtttccgttgatcatccttttTTTTGTAACAAATTGAtatttacagtcttgtcccatcactgcaactcccctatggactcgcgagaggtgaaggtcgagacgccgtgcatcctccgaaacacggccctgccaaaccgcactgcttcttggcaCACTGCTaaacccagccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867933 lncRNA upstream 3257 48568690 ~ 48568913 (+) True G1632592
TU1867930 lncRNA upstream 9966 48561966 ~ 48562204 (+) True G1632589
TU1867892 lncRNA upstream 71370 48500555 ~ 48500800 (+) True G1632552
TU1867890 lncRNA upstream 74548 48497404 ~ 48497622 (+) True G1632550
TU1867876 lncRNA upstream 93578 48478367 ~ 48478592 (+) True G1632537
TU1867936 lncRNA downstream 66 48572499 ~ 48572813 (+) True G1632595
TU1867714 lncRNA downstream 9389 48581822 ~ 48583066 (+) True LOC110498372
TU1867938 lncRNA downstream 12317 48584750 ~ 48584964 (+) True G1632597
TU1867990 lncRNA downstream 101201 48673634 ~ 48674090 (+) True G1632645
TU1868086 lncRNA downstream 280605 48853038 ~ 48853247 (+) True G1632722
XR_002469766.2 mRNA upstream 7842 48561566 ~ 48564328 (+) True LOC110498048
XM_036954973.1 mRNA upstream 405426 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 442790 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 445552 48122225 ~ 48126618 (+) False LOC110498044
XM_036954963.1 mRNA upstream 460523 48091388 ~ 48111647 (+) True LOC110498040
XM_036954983.1 mRNA downstream 16511 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 16799 48589232 ~ 48677474 (+) False LOC110498046
XM_036954979.1 mRNA downstream 16799 48589232 ~ 48677474 (+) False LOC110498046
XM_021574607.2 mRNA downstream 17217 48589650 ~ 48677474 (+) False LOC110498046
XM_036954975.1 mRNA downstream 17217 48589650 ~ 48677474 (+) False LOC110498046
TU1867254 other upstream 442790 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 442790 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 823088 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 910935 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 2312522 46257919 ~ 46259648 (+) False LOC110498004
TU1867715 other downstream 6345 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 17192 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 126624 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 591521 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 591521 49163954 ~ 49178402 (+) True zgc:193593

Expression Profile