RNA id: TU1867990


Basic Information

Item Value
RNA id TU1867990
length 425
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1632645
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48673634 ~ 48674090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcagATCGTTatgcagtcagtcagccaggcaggcagatcgtcatgcagatcattatgcagtcagccaggcaggcagATTGTCAtgcagccaggcaggcagacagattgTCATGCAGTCATCCAGGCAGGAAGACAGATTGTCATGCAGTCATCCAGGCAGGAAGACAGATCGTCAGCCAGGCAGGCATACAGATCATCatgcagtcagtcagccaggcaggcagATCAAGAGCAGACATGGTTTTGTTCAGGCTAGGCTAGACCAGGTTTGGTTAGTTgtattccttctctccttctcttagcTCTGTTCCAGCTGCTCTTCCTGTAGTTTGCTGGGCTGATGACCGGTTTATGACCAGGGCTAAACTTATCAGAACTCAACTTCACTACCTCACAGGCTCCTAGCACAGAGCAGCACGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867938 lncRNA upstream 88670 48584750 ~ 48584964 (+) True G1632597
TU1867714 lncRNA upstream 90568 48581822 ~ 48583066 (+) True LOC110498372
TU1867936 lncRNA upstream 100821 48572499 ~ 48572813 (+) True G1632595
TU1867935 lncRNA upstream 101201 48572170 ~ 48572433 (+) True G1632594
TU1867933 lncRNA upstream 104721 48568690 ~ 48568913 (+) True G1632592
TU1868086 lncRNA downstream 178948 48853038 ~ 48853247 (+) True G1632722
TU1868126 lncRNA downstream 242487 48916577 ~ 48916897 (+) True G1632762
TU1868128 lncRNA downstream 248394 48922484 ~ 48922710 (+) True G1632764
TU1868129 lncRNA downstream 248732 48922822 ~ 48923115 (+) True G1632765
TU1868132 lncRNA downstream 255238 48929328 ~ 48929659 (+) True G1632768
XM_036954974.1 mRNA upstream 91086 48251112 ~ 48582548 (+) False LOC110498372
XR_002469766.2 mRNA upstream 109306 48561566 ~ 48564328 (+) True LOC110498048
XM_036954973.1 mRNA upstream 506890 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 544254 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 547016 48122225 ~ 48126618 (+) False LOC110498044
XR_005037764.1 mRNA downstream 113129 48787219 ~ 48792402 (+) True LOC110498051
XM_021574617.2 mRNA downstream 455580 49129670 ~ 49155002 (+) False LOC110498053
XM_036954990.1 mRNA downstream 455692 49129782 ~ 49155002 (+) False LOC110498053
XM_036954989.1 mRNA downstream 455754 49129844 ~ 49155002 (+) False LOC110498053
XM_021574618.2 mRNA downstream 456033 49130123 ~ 49155002 (+) True LOC110498053
TU1867715 other upstream 93978 48578778 ~ 48579656 (+) False LOC110498372
TU1867254 other upstream 544254 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 544254 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 924552 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 1012399 47660126 ~ 47661235 (+) True G1631702
TU1868002 other downstream 24967 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 489864 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 489864 49163954 ~ 49178402 (+) True zgc:193593
TU1869832 other downstream 1489749 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1569529 50243619 ~ 50255252 (+) True LOC110498078

Expression Profile