RNA id: TU1868138


Basic Information

Item Value
RNA id TU1868138
length 240
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G1632774
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48941749 ~ 48941988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatataaactcagcaaaaaaagaaatgtcctctcactgtcaaaagcgttcattttcagcaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagaagatgaagatctgtgaagtttttgggatttttacaaattatctttgaaatgcaggttcctgaaaaagggatgtttctttttttgctgagtttatatacataATTTTATTAACAGGACACTGTCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868136 lncRNA upstream 4237 48937311 ~ 48937512 (+) True G1632772
TU1868132 lncRNA upstream 12090 48929328 ~ 48929659 (+) True G1632768
TU1868129 lncRNA upstream 18634 48922822 ~ 48923115 (+) True G1632765
TU1868128 lncRNA upstream 19039 48922484 ~ 48922710 (+) True G1632764
TU1868126 lncRNA upstream 24852 48916577 ~ 48916897 (+) True G1632762
TU1868142 lncRNA downstream 5301 48947289 ~ 48947488 (+) True G1632778
TU1868236 lncRNA downstream 169954 49111942 ~ 49112638 (+) True G1632870
TU1868272 lncRNA downstream 221213 49163201 ~ 49163400 (+) False zgc:193593
TU1868286 lncRNA downstream 273404 49215392 ~ 49216482 (+) False LOC110498056
TU1868294 lncRNA downstream 275929 49217917 ~ 49218117 (+) True LOC110498056
XR_005037764.1 mRNA upstream 149347 48787219 ~ 48792402 (+) True LOC110498051
XM_021574606.2 mRNA upstream 263580 48589650 ~ 48678169 (+) False LOC110498046
XM_036954984.1 mRNA upstream 263580 48589650 ~ 48678169 (+) False LOC110498046
XM_036954981.1 mRNA upstream 264275 48589650 ~ 48677474 (+) False LOC110498046
XM_021574617.2 mRNA downstream 187682 49129670 ~ 49155002 (+) False LOC110498053
XM_036954990.1 mRNA downstream 187794 49129782 ~ 49155002 (+) False LOC110498053
XM_036954989.1 mRNA downstream 187856 49129844 ~ 49155002 (+) False LOC110498053
XM_021574618.2 mRNA downstream 188135 49130123 ~ 49155002 (+) True LOC110498053
XM_036953827.1 mRNA downstream 218717 49160705 ~ 49167546 (+) False zgc:193593
TU1868002 other upstream 241181 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 263594 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 362093 48578778 ~ 48579656 (+) False LOC110498372
TU1867254 other upstream 812369 48123948 ~ 48129380 (+) False LOC110498044
TU1868247 other downstream 221966 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 221966 49163954 ~ 49178402 (+) True zgc:193593
TU1869832 other downstream 1221851 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1301631 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1665398 50607386 ~ 50610479 (+) True G1634948

Expression Profile