RNA id: TU1868394


Basic Information

Item Value
RNA id TU1868394
length 1565
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1633019
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49326663 ~ 49370871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttttGTAACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGTTTCAGAAATAAATAAGAAAATAAGGCTGTGGAATTCACAATGTGCAGTTAAAACATGAAAAGGCAATTCTATGTCCATAGTCTTGCAAACAAATTCCAACTGCATTTGGTATTGATACAAAACAATAACtatattctgatttgtttttgttttgttgaaatcTTAAATATACAACACAGACAGGCAACTCCACCTTTGGGAAAAATCAGCTGTGAGTTAGTATTATAAAAAAAGATACACATTTGGTCTAAAGTAACTCATTGAAAGCCTGATTTGATAATAGCTGGGAATCTTTGGGAACTTTTAATGGAGCTGGAACCAGTAACCCTCTTTCTGATGAAGAGGGTCACCAACTACATGATTTCAAAAGAACAACAGGCAGCTTGACATTGTGAAATTTGAAATGAACTGTGAGGTACAGGGCTAATGTGGAGGGGTACAGAGACATACATATACCTTCCCCAACGTATTTGCTGACTTTCCGATGATTAGTGCATTAAACATTGGACTCTAACACTTAATGCAGTTATGTTACAAGCAGAGACACTTAAAGAAACAGTTAGCAAGCACACAGGTTTGTAATGAAATAATGTCCAGATTCATTATATTTCCACTTAATCTTGCTAAACTTAATTTGTTGATGCGTAAAGATATGTTCAATAAAGCCAAGGGTATCAGACCCATATATTTTATTCTCTGAATATCACTTAATAATCGCACATGTAATAATGGAGATAAATTCAATATAAcaatcctttgttttgtttttgtttatggTGCTATCCTCTCGGTATCGTCTCTTGATAGTGACCTCTTTCCTCTCGGGTTTCGTGAGTAACCAGGCGACTGTATTGCCTCAGATTCATCTTCCGGTTCTTCCTCAGGTATAGGGACTAGGTAGGTTTCAGGGTCGGGCTCGTAGCCGGTGGCTAGAAACTGGGTAACCTTGTCCATTGTAAGGAATGCCAACACACTGGGAGGAGTCGCAGTAGCCAGGGGGTCCAGGTGGTCCCCTCACTCCTGAGGTTCCCTGGCGACCAGGAGGGCCCCGAGGCCCAGCAGAGCCCGTAGTACCTGTGGCGCCGGTTCGAGCCTCGCCTGGTGGCCCTGGgagtagggagagggagatgggttgTGGAAAATAATTAAAGAATAGTCAGAACGAAACCTCCCTGACATCACCCTTAAATCCCAACTGGAAGTGGAGGGGGGGACTATTGGTTTCTACCACTGTAATTTCAATATTTAGACGGCTCAATTAAAAGTCTGATAAGAAGTGAGCCAGGGCTCTGGTGAGTTACTCCCTGCCCCTGTCTGTCTAGACAGTACAAACAAAGGATGGAATTTCCtccactctctcgctctgtcttgcTCTTTGATCTCTTAAGTGAGCACATGTGTTGTCAATGAAGGAGCCACCAAAGCAACGCTCATTGTACAACAATCTGATTCTCCCACTCAACAATGAGTCATCATCGCTAGCTAACTAGCTTCCTCCTACAGGAGTTTAGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868294 lncRNA upstream 108546 49217917 ~ 49218117 (+) True LOC110498056
TU1868286 lncRNA upstream 110181 49215392 ~ 49216482 (+) False LOC110498056
TU1868272 lncRNA upstream 163263 49163201 ~ 49163400 (+) False zgc:193593
TU1868236 lncRNA upstream 214025 49111942 ~ 49112638 (+) True G1632870
TU1868142 lncRNA upstream 379175 48947289 ~ 48947488 (+) True G1632778
TU1868449 lncRNA downstream 34608 49405479 ~ 49407939 (+) True G1633072
TU1868464 lncRNA downstream 55440 49426311 ~ 49453984 (+) True G1633087
TU1868488 lncRNA downstream 86211 49457082 ~ 49458853 (+) True G1633107
TU1868496 lncRNA downstream 99459 49470330 ~ 49470546 (+) True G1633114
TU1868497 lncRNA downstream 100607 49471478 ~ 49471750 (+) True G1633115
XM_036953828.1 mRNA upstream 108108 49200093 ~ 49218555 (+) False LOC110498056
XM_036954992.1 mRNA upstream 134224 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA upstream 134224 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953827.1 mRNA upstream 159117 49160705 ~ 49167546 (+) False zgc:193593
XM_021574618.2 mRNA upstream 171661 49130123 ~ 49155002 (+) True LOC110498053
XM_021574629.2 mRNA downstream 194985 49565856 ~ 49611711 (+) False LOC110498063
XM_036954999.1 mRNA downstream 384097 49754968 ~ 49926745 (+) False LOC110498066
XM_036955001.1 mRNA downstream 384097 49754968 ~ 49926745 (+) False LOC110498066
XM_036954998.1 mRNA downstream 384099 49754970 ~ 49926745 (+) False LOC110498066
XM_036955002.1 mRNA downstream 384551 49755422 ~ 49926745 (+) False LOC110498066
TU1868248 other upstream 148261 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 159110 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 626095 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 648508 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 747007 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 792968 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 872748 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1236515 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 3204062 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 3204085 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile