RNA id: TU1868464


Basic Information

Item Value
RNA id TU1868464
length 268
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1633087
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49426311 ~ 49453984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGATCTGGACCCTGTCAGGGCTGATGTCAAAAACTCCCACCATGCGAGAGATGAAGGAGCGAATGGTTTTGAAGTTCAGACGGCCGATACTCCAGGAGCCATCGATCAGCAGGACTATATCAGCCCGGGCTTTGGTCTTACACACCACATCTGAGGGGTCTTGAGCTTCAACTGTGGAGAATAACACAGCAACAAAGGCAGCCACGGCCAGCGACAGCCTTATCTTCATTTTCATACGTTATGGGTCAGCAGCACATGAATCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868449 lncRNA upstream 18372 49405479 ~ 49407939 (+) True G1633072
TU1868394 lncRNA upstream 55440 49326663 ~ 49370871 (+) True G1633019
TU1868393 lncRNA upstream 56399 49326663 ~ 49369912 (+) False G1633019
TU1868294 lncRNA upstream 208194 49217917 ~ 49218117 (+) True LOC110498056
TU1868286 lncRNA upstream 209829 49215392 ~ 49216482 (+) False LOC110498056
TU1868488 lncRNA downstream 3098 49457082 ~ 49458853 (+) True G1633107
TU1868496 lncRNA downstream 16346 49470330 ~ 49470546 (+) True G1633114
TU1868497 lncRNA downstream 17494 49471478 ~ 49471750 (+) True G1633115
TU1868499 lncRNA downstream 19484 49473468 ~ 49473857 (+) True G1633117
TU1868507 lncRNA downstream 30440 49484424 ~ 49484657 (+) True G1633122
XM_036953828.1 mRNA upstream 207756 49200093 ~ 49218555 (+) False LOC110498056
XM_036954992.1 mRNA upstream 233872 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA upstream 233872 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953827.1 mRNA upstream 258765 49160705 ~ 49167546 (+) False zgc:193593
XM_021574618.2 mRNA upstream 271309 49130123 ~ 49155002 (+) True LOC110498053
XM_021574629.2 mRNA downstream 111872 49565856 ~ 49611711 (+) False LOC110498063
XM_036954999.1 mRNA downstream 300984 49754968 ~ 49926745 (+) False LOC110498066
XM_036955001.1 mRNA downstream 300984 49754968 ~ 49926745 (+) False LOC110498066
XM_036954998.1 mRNA downstream 300986 49754970 ~ 49926745 (+) False LOC110498066
XM_036955002.1 mRNA downstream 301438 49755422 ~ 49926745 (+) False LOC110498066
TU1868248 other upstream 247909 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 258758 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 725743 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 748156 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 846655 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 709855 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 789635 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1153402 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 3120949 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 3120972 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile