RNA id: TU1868508


Basic Information

Item Value
RNA id TU1868508
length 214
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1633123
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49484816 ~ 49485029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtaacatgaagtcctatgcgtgtcatctgatgaagatcattaaaggttagtgatttaattttatctctatttgtgctttttgtgactcctctctttggctggaaaaatggctgtgcttattgtggtttggtggtgacctaacaatcgtttgtggtgcttttgctgaaaagcatatttgaaatcggacactgtggtgggattaacaacaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868507 lncRNA upstream 159 49484424 ~ 49484657 (+) True G1633122
TU1868499 lncRNA upstream 10959 49473468 ~ 49473857 (+) True G1633117
TU1868497 lncRNA upstream 13066 49471478 ~ 49471750 (+) True G1633115
TU1868496 lncRNA upstream 14270 49470330 ~ 49470546 (+) True G1633114
TU1868488 lncRNA upstream 25963 49457082 ~ 49458853 (+) True G1633107
TU1868516 lncRNA downstream 21917 49506946 ~ 49507210 (+) True G1633130
TU1868517 lncRNA downstream 22183 49507212 ~ 49507447 (+) True G1633131
TU1868518 lncRNA downstream 22996 49508025 ~ 49522824 (+) True G1633132
TU1868546 lncRNA downstream 57122 49542151 ~ 49542464 (+) True G1633159
TU1868552 lncRNA downstream 64227 49549256 ~ 49549479 (+) True G1633165
XM_036953828.1 mRNA upstream 266261 49200093 ~ 49218555 (+) False LOC110498056
XM_036954992.1 mRNA upstream 292377 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA upstream 292377 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953827.1 mRNA upstream 317270 49160705 ~ 49167546 (+) False zgc:193593
XM_021574618.2 mRNA upstream 329814 49130123 ~ 49155002 (+) True LOC110498053
XM_021574629.2 mRNA downstream 80827 49565856 ~ 49611711 (+) False LOC110498063
XM_036954999.1 mRNA downstream 269939 49754968 ~ 49926745 (+) False LOC110498066
XM_036955001.1 mRNA downstream 269939 49754968 ~ 49926745 (+) False LOC110498066
XM_036954998.1 mRNA downstream 269941 49754970 ~ 49926745 (+) False LOC110498066
XM_036955002.1 mRNA downstream 270393 49755422 ~ 49926745 (+) False LOC110498066
TU1868248 other upstream 306414 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 317263 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 784248 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 806661 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 905160 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 678810 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 758590 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1122357 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 3089904 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 3089927 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile