RNA id: TCONS_00049713


Basic Information

Item Value
RNA id TCONS_00049713
length 3596
RNA type mRNA
GC content 0.53
exon number 8
gene id XLOC_025167
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15358459 ~ 15392466 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGATTCCTGGCCATTTTTATCAGGCCACATATTTTTGGTCAGGTTTTCAGAATTGGAGTCTATCATAAAACCGTAGCCTGATGAACAGATTGCGTGCCCCCCATACACACCTAATCGCAGCCATCCTGACGTCTTTGATGATCGGTTGGTCTGAGATTGATTAGTCAGTCATGAACGGCTCCTTATTAACTCCACCGAGTCCACGGGCTGCGGCTAATTCATCTCCCCTTCCGCCATCCCCTTCTCCATCGCCCTCTCCTCCGTCTCCATCGCTGTTGCCCTTGTCCACCAGACCTCCGCCTTTGCCTCCTCCGACTCCTGTAGGTCAACCCTTGTCTTCGTTATCCGACACACCCACACCATCGCCATCTCCCTGCCTCAGCTGGACCGAGTTCTGTGAGCTCCATGCCCGGGTAGCCGCCGGGGATTTTGCTCGACATTTCCGGGCCTTCCTTCAGGAGAACCCAAATTACTCCCCTGATTCGGCAGCTCTTTTTTGCCGTCGCTTTACAGACAGATTTGTTCGGCATTTTGAGAGCGAGCTTGAAGTAACTGGTATCAGTAGGGAAGGTACGGTGAATTGGGTCGCCCAATCGGATGTTACCTCGTTAGAGGAGGATGCAGCATCTCCGTCTTTGCTAACGGCGGAATCCGCAGCAGCCTCATGCCCACCTATTCACACACGGGCCACTCCCAAACCTATCCTGACCCAGGAAAGCCGTGGTACAGAACGATTCCAGAACTCTGGAGGCTTTCAGGACTCGTACGCTCACGCGCAGATTCTCCCACCGTCCTCCTCGTCGTCTTGCTCGTCCTCTATGGGTGGAAATAACGGGCGCAGAGAGGAGAGGGGAATGGCCCTCAAACACAATCCTTCAGGATATAAAGACCTAGAGGAAGAGGAAGATAGCTGGGCAGGACCTGTAACTCTGGAGGAGGTAGAGACCGACATCATAGGTAGGGACAATGAGGGCGAGGATTTAGAAAGAGCCGACCTCACCCTCAATCCCTCCAGTGCACCAGCAAACTCGAAAGGCAACGGGACGCCTATTGGAGGTCACTCCAAGAACAAGTTAAAGAAGCGTTTCTCTTTGCGCAGTGTGGGACGGAGTGTCAGGGGTAGTGTGAGGGGCATCTTGCATTGGCGCAGCTCCTCCAGCGACTCCCCGCAGAACTGCAGCAACTCCAGCCCTCTTCCCTCCAGCTACAGCTACACTACTGGCCTGCAGGATGGCAAGAGGAACTCCGGCTCGCAAGGGGTTCCCTCTTCTCTCCCGGTGTCTCTCTCTCTTCCCCTTTCCCTTCCTCACTCCTCGTCCTCTTCACTGCCCCCTTCATCCTCCAGCAGCGCCACTTCTCTTTCGCTCTCTGAGGCCCGCGACTGGCGAAGGAGCAACGGAGATGGCGAGAAGGAGAAATGGAGTCACCGGTTGGAAAAACTACGACTGTCTCGCTCTCCTCCGCCAAATCTGTCCAGCGCAGCTCCTCCATCTTCGGTTTTATCCCCTTCATCGCTCCCACCAAGCAGCATCAACGCCTCCAGGAAGATGGGCAGGCTGGTGCGGGAGGGAGGAGTGACCGTGTGCTCATCTTCGGATGAGTTCGCCAGCACTCACGGGTTCCCAGGCTTTTCCTTTGGACTGCTGCATCACGGCGCAGACAGCTCTGTGTCTGGACATCCCACAGCCATAGGTGGCGCTGTGGGTGGACGGGGTACGCGTTGGCACAAGTGCCGTCTAGTTCTGAAAGAACGAGATAAGGATGGAGGGGATGGAGGGTTGGAATATTTCCTGGAGTTTTACATCCCGCCGAAGtcCTCCAAGCCCAGACTGACTGTCCCATGCTGCTCTATTGTTGACGTGAGGAGCACTACAGCCATTGAGGTGCCAGACAAGGAGAACACCTTCCTTCTACAGATGGAAGGTCAGGTGCAGTACGTGATTGAGACCAGAGATGCGGTTCAGATGAGAGCGTGGCTCAGCGACATCAGAAACGCTATCTGTTTGAGTGAGCAAGAGGATGTTGATGGGGTATGTGGGAGTGCTCTGACTGACCTCAGCGGTACGCCGGAATTCAGCGACCGCCTGTCTCAAGTGTGCTATGGTGGAGTTGGTGGTTCTCCACAGCTGGAGCCTCTACCTCCTGAATTACCGCCCCGCGCCCCTCTGGACGAATCAGATAGTCGGCTGCTTGGTGGGGGCGGAGCCAGTCTCGGCACACCTTTTGCTGAAACCCCTGATGCCACAGGGTCGTTCCTGTTCTCTGATGTGTCTGTGTCTGAGACGGTGGAGCATCCTCTGAGCGAGTGTCAGTGGTTTCACGGTACACTCTCGCGTCTTAAAGCGGCTCAGCTGGTGCTGGCGGGTGGCATGGCCAGTCATGGAGTATTTCTCGTGCGGCAGAGTGAGACACGGCGGGGGGAGTATGTGCTCACCTTCAACTTCCAGGGAAAAGCAAAGCACTTGCGCCTCTCTCTGAACGAGGATGGACAGTGTCGTGTGCAGCATCTCTGGTTCCAGTCTATTTTTGACATGCTGGAGCATTTCCGTGTGCACCCCATTCCCCTGGAGTCTGGGGGTGCCTCTGATGTCACCCTCATCAGCTTTGTGGGGGCTACAAATGTCCGGCAACCAGACTTGACCAGCAGACCCCGTAGTCCTCCCCAACCGCCGCCTCCACCCTTGCCTCCAGGACGCCCCCCGCCCCCAACCCCGCCCCAGGAGCGCGGACCCGAGCCTGAGGTGGCCGGCGGAGGCGGAGCGAGCAGCGGGGCGGAGGAGTGCGAGGAGCGAGAGCGGGAGCCAGCGCTTCTCCAACTGGAAGGGGTGGAGGGAGAAGAGCGCGAAGGAGGAAGAGCGAGAGCTATCGACAACCAGTACTCCTTCTTCTGAACCCAGAACCAGGACAGCCCTTCACAATCAGTATTTTCAGTATTCTCCAACTGACTGATTTAttattaacactattaaacaTGAGCTTTCACCATGCGAGAGagggagatatatatatatatataaatagagagagagagagagattcataCACATTGAcggtacatttttaaaacactaaagTATCGGTACTACACTAAATCAGAGGTGCATTGTGAAACTGTTGGGTCGGCTTTTACTAATTGGTTTCTCCAGCGTTTGTCAGTGTGAACGTTTCCTCCTCTGGTGCTTGTTGATTTTGCATAGGAAGGTACGACCATGAGCGCCAccgtttttattttagcatttcgTAACGAGTCGCAATTTCAAGTCGGGACTCGGGATGACTAGTATTCTTTAACCCTTCGCActtatacaaaaaataatttttttggtcgtttgttgttgttgttgttgatgttgaaaTTTTTACTTGTTCAGAGATTGTTACCCACCAGCActcttgttattgttgttatattattattattattaatactggaGACGTTTTAGTTGATTTCTTTATGTTCTGCCACTGACAAACTACGAatgtcgcaaaaaaaaaaaaacaacgataCAAAAACCAAGTAATAACTATTCTTCCTGTTACTTTCAGTTGTGATTATTTTGCTAGATACTACCTTGGGCTTAACAaagttttgcc

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity molecular_function
GO:0035591 signaling adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-188 Predicted to enable transmembrane receptor protein tyrosine kinase adaptor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in plasma membrane. Orthologous to human SH2B1 (SH2B adaptor protein 1).

Ensembl:

ensembl_id ENSDART00000083976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052624 lncRNA upstream 88586 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00052623 lncRNA upstream 129041 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052622 lncRNA upstream 1073038 14277650 ~ 14287841 (+) True XLOC_025151
TCONS_00052331 lncRNA upstream 1106114 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00052330 lncRNA upstream 1112341 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00049715 lncRNA downstream 112740 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA downstream 112833 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052332 lncRNA downstream 125108 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00052625 lncRNA downstream 225834 15618278 ~ 15621754 (+) True XLOC_025172
TCONS_00052626 lncRNA downstream 247008 15639452 ~ 15646667 (+) True XLOC_025173
TCONS_00049710 mRNA upstream 43487 15296824 ~ 15317392 (+) True XLOC_025166
TCONS_00049708 mRNA upstream 76186 15271943 ~ 15284693 (+) False XLOC_025165
TCONS_00049709 mRNA upstream 76784 15279016 ~ 15284095 (+) True XLOC_025165
TCONS_00049707 mRNA upstream 174587 15176737 ~ 15186292 (+) True XLOC_025163
TCONS_00049706 mRNA upstream 302415 14768364 ~ 15058464 (+) True XLOC_025162
TCONS_00049714 mRNA downstream 1984 15394428 ~ 15425689 (+) True XLOC_025168
TCONS_00049717 mRNA downstream 158078 15550522 ~ 15608166 (+) False XLOC_025171
TCONS_00049718 mRNA downstream 158100 15550544 ~ 15608033 (+) True XLOC_025171
TCONS_00049720 mRNA downstream 344367 15736811 ~ 15746999 (+) True XLOC_025175
TCONS_00049722 mRNA downstream 381547 15773991 ~ 15795396 (+) False XLOC_025176
TCONS_00049704 other upstream 676276 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049690 other upstream 961227 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 1116095 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 1503163 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 1954341 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049719 other downstream 298859 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 363279 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 980568 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 1176821 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049746 other downstream 1276159 16668603 ~ 16678650 (+) False XLOC_025192

Expression Profile

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