RNA id: TU1869788


Basic Information

Item Value
RNA id TU1869788
length 856
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1634275
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50147195 ~ 50148050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcgcgtgtcatgccctgaccatagagagcctttttattctctattttggttaggtcgggtgtgactagggtgggtaatctaggttgtttatttctatgttggcctggtatggttcccaatcagaggaagctgtttatcgttgtctctggttgggggatcatatttaggcagacatttccccactgtgttttgtgggatcttgtttatgtgtagttgcctgtgagcacttcaTTTACTTCACGTTTCAtttgttctttattgtttttgtgtgtttcatTCAATAAACATGTGGAACCAATATCAAAACAGGCAAGCCTTTTTTGCAAAATAATTGGGGCTCAAAATTATAAATATGCAGGTGAGCAGCCATATTGTTTTATTGTAAAAACACAGGCAATCATTCAGAACTTTGATAACTGTTTTTGGCAGAAAATCATCTCTACTTTGCATTGCTGTACAGGAGGCCAGTAAATACCTTGTTGACATTGGCAAAGAGGGATGTGGATATGAGAAAAAGTATCTTTATCAATGACCAAAATGATTTTTAGGGGTAgtattattgtcacgccctggcatTAGTATTCTGTgatttctttattatgttggttaggccagggtgtgacatgggtgatttatgtgtcttgttttgtctaggggttttgtagtctatggggttgtgttcagttgagtgttctaggtaagtctatggttgcctggagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttaggtatctggtgggtgattgttcctgtctctgtgttttgcaccagttcggactgtttcggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869807 lncRNA upstream 37849 50109127 ~ 50109346 (+) True G1634294
TU1869806 lncRNA upstream 38459 50108472 ~ 50108736 (+) True G1634293
TU1869805 lncRNA upstream 38959 50108008 ~ 50108236 (+) True G1634292
TU1869793 lncRNA upstream 54290 50092567 ~ 50092905 (+) True G1634280
TU1869703 lncRNA upstream 152418 49963673 ~ 49994777 (+) True G1634198
TU1869814 lncRNA downstream 354 50148404 ~ 50148668 (+) True G1634301
TU1869819 lncRNA downstream 3527 50151577 ~ 50151873 (+) True G1634306
TU1869821 lncRNA downstream 6040 50154090 ~ 50154328 (+) True G1634308
TU1869824 lncRNA downstream 8722 50156772 ~ 50157063 (+) True G1634311
TU1869829 lncRNA downstream 19962 50168012 ~ 50168721 (+) True LOC110498072
XM_021574639.2 mRNA upstream 2546 50088266 ~ 50144649 (+) False LOC110498069
XM_021574640.2 mRNA upstream 2546 50101025 ~ 50144649 (+) True LOC110498069
XM_021574636.2 mRNA upstream 78813 50037765 ~ 50068382 (+) False zgc:113142
XR_005037768.1 mRNA downstream 15595 50163645 ~ 50168749 (+) False LOC110498072
XM_036955015.1 mRNA downstream 15596 50163646 ~ 50168749 (+) False LOC110498072
XR_005037766.1 mRNA downstream 15597 50163647 ~ 50168749 (+) False LOC110498072
XR_005037765.1 mRNA downstream 15598 50163648 ~ 50168749 (+) False LOC110498072
XR_005037767.1 mRNA downstream 15599 50163649 ~ 50168749 (+) False LOC110498072
TU1868248 other upstream 968793 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 979642 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1446627 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1469040 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1567539 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 15789 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 95569 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 459336 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2426883 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2426906 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile