RNA id: TU1869824


Basic Information

Item Value
RNA id TU1869824
length 292
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1634311
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50156772 ~ 50157063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggaAGGATCCTTAGAGTATTCGTGTGAGTAGTAGATATGTATCAGTACAGAGAGATAGGCCAATAAATGATATATGCTTCAGTAAGATTGACTTTTTAGTtttcatagcaatggttatcaactgtactgcagggatagAATGCAAGTCGCAGAAaatagaggttgtggtggcagctgcagaaaAGTATTTGGGTGTAAGAGATTTGACGTCAGGTTGTGTTACAGGttgtgttgagtggtggtgtcccCTTCTTTCAGGCTGCTGGCCTGAGGTAGGACTAGatagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869821 lncRNA upstream 2444 50154090 ~ 50154328 (+) True G1634308
TU1869819 lncRNA upstream 4899 50151577 ~ 50151873 (+) True G1634306
TU1869814 lncRNA upstream 8104 50148404 ~ 50148668 (+) True G1634301
TU1869788 lncRNA upstream 8722 50147195 ~ 50148050 (+) True G1634275
TU1869807 lncRNA upstream 47426 50109127 ~ 50109346 (+) True G1634294
TU1869829 lncRNA downstream 10949 50168012 ~ 50168721 (+) True LOC110498072
TU1869837 lncRNA downstream 20199 50177262 ~ 50178054 (+) True G1634322
TU1869839 lncRNA downstream 22200 50179263 ~ 50179485 (+) True G1634324
TU1869844 lncRNA downstream 27852 50184915 ~ 50185148 (+) True G1634329
TU1869848 lncRNA downstream 32762 50189825 ~ 50190052 (+) True G1634333
XM_021574639.2 mRNA upstream 12123 50088266 ~ 50144649 (+) False LOC110498069
XM_021574640.2 mRNA upstream 12123 50101025 ~ 50144649 (+) True LOC110498069
XM_036955012.1 mRNA upstream 88390 50037765 ~ 50068382 (+) False zgc:113142
XR_005037768.1 mRNA downstream 6582 50163645 ~ 50168749 (+) False LOC110498072
XM_036955015.1 mRNA downstream 6583 50163646 ~ 50168749 (+) False LOC110498072
XR_005037766.1 mRNA downstream 6584 50163647 ~ 50168749 (+) False LOC110498072
XR_005037765.1 mRNA downstream 6585 50163648 ~ 50168749 (+) False LOC110498072
XR_005037767.1 mRNA downstream 6586 50163649 ~ 50168749 (+) False LOC110498072
TU1868248 other upstream 978370 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 989219 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1456204 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1478617 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1577116 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 6776 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 86556 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 450323 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2417870 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2417893 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile