RNA id: TU1869837


Basic Information

Item Value
RNA id TU1869837
length 793
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1634322
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50177262 ~ 50178054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttgatttgatttgatttggtcagtCTATggcatggaaagaacaggtgtccttaatgttttgtaaactcagtgtttacacaggcagctcaaTGCTGATATGtgttccactaattggtcttttgaccaatcacatcagatctttttacATAAGATCtctttcagagctgatctgattggtcaaaagccATTTTACCATTTTCCTTCCAAATTATATAGCGTCTATACACACCATGTATTTAGACTCTGGATTCTCACACATACTCACTCTATGTCTGCGTTTAGACAGGTAGCCCAATTCTTATAATTGTTTTCACtaatggtcttttgaccaatcacatcagatcttttcacataaGATCtctttcagagctgatctgattggtcaaaagaccattaGTGAAAACAATTATAAGAATTGGGCTACCTGTCTAAACGCATACATAGAGTGAGTATGTGTGAGAATCCAGAGTCTAAATACATGGTGTGTATAGACGCTATATAATTTGGAAGGAAAAtggtatgtacagcagtagatctATTAGGATGAGCTATGTCGAGAatacagtatatcaaatcaaatcaatttttattggtcacatacacgtgattagtagtgaaattcttgtgcttttagctccgacagtgcagtaatatctaacaagtaatatctaaaaaAAATTACACAAcctatacccaatacacacaaatctaagtaggaatgaattaagactatatagtacatatggacgagcgatgtcagagtaGAATGGACTAATATACCGTAGAagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869829 lncRNA upstream 8541 50168012 ~ 50168721 (+) True LOC110498072
TU1869824 lncRNA upstream 20199 50156772 ~ 50157063 (+) True G1634311
TU1869821 lncRNA upstream 22934 50154090 ~ 50154328 (+) True G1634308
TU1869819 lncRNA upstream 25389 50151577 ~ 50151873 (+) True G1634306
TU1869814 lncRNA upstream 28594 50148404 ~ 50148668 (+) True G1634301
TU1869839 lncRNA downstream 1209 50179263 ~ 50179485 (+) True G1634324
TU1869844 lncRNA downstream 6861 50184915 ~ 50185148 (+) True G1634329
TU1869848 lncRNA downstream 11771 50189825 ~ 50190052 (+) True G1634333
TU1869850 lncRNA downstream 12625 50190679 ~ 50192189 (+) False G1634334
TU1869851 lncRNA downstream 12625 50190679 ~ 50192189 (+) True G1634334
XR_005037768.1 mRNA upstream 8513 50163645 ~ 50168749 (+) False LOC110498072
XM_036955015.1 mRNA upstream 8513 50163646 ~ 50168749 (+) False LOC110498072
XR_005037766.1 mRNA upstream 8513 50163647 ~ 50168749 (+) False LOC110498072
XR_005037765.1 mRNA upstream 8513 50163648 ~ 50168749 (+) False LOC110498072
XR_005037767.1 mRNA upstream 8513 50163649 ~ 50168749 (+) False LOC110498072
XM_036955016.1 mRNA downstream 25015 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA downstream 25023 50203077 ~ 50219556 (+) True iars2
XM_036955018.1 mRNA downstream 65443 50243497 ~ 50265945 (+) False LOC110498078
XM_036955019.1 mRNA downstream 93990 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 124889 50302943 ~ 50335206 (+) False LOC110498377
TU1869832 other upstream 9876 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 998860 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1009709 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1476694 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1499107 48589625 ~ 48678155 (+) True LOC110498046
TU1869885 other downstream 65565 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 429332 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2396879 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2396902 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2396902 52574956 ~ 52576154 (+) True hnrnpua

Expression Profile