RNA id: TU1869850


Basic Information

Item Value
RNA id TU1869850
length 1436
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1634334
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50190679 ~ 50192189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTACAAGGATATTAAATATTAATCATGACAAATACATTTCAAAGCTTTATTGAACCCGACATACAAAGAGATCTAAAAGCATCACTGACTTACATAAGTCACATGTTTACAATATAAAATTCAATAAGTTCATCACAAGTGTAGGCTACATCAAGCCTCTGACAAAGTATCCATTGCAGTTGCAGGAGTAAAAATAGTACTGTTAAGGACATAAGTGCCACAGATCAGACAAATATAGGCTGTTATTTTCCACAATGCACCCCAAACAGTTGCTGATTTCCCCAGGCACAGCCAAAATGTACACAAGTTAAACTCTGCTGTCTGAAATCAGGAACAGTGGGACCAAGTGAATCAAAGGAGTAGGGGCGTCTCAGATAATGGGTCGTAACTTGATTTCAAAAAACGCACAGACGCGCACCAGTGGTCCGTGGCCATGTAGCTCACGTTGGGGACAACAGTCTCTAAAGCTAACCCTTTACCTCATTCTCCTAACCTGGCACACCAAGTCACCTAACCGGCCACGTTAATTATCCTTACCTGCCATGTAAACAAATGTCAAGAAACGGTCTCAACACCAGAACTGACAAATTCAGGGTGTTTTACCAGGAAAAGCAGGCACCAATGTGCTTTTCCTGATTTCATGGGGTTTCTGGATTTGCGGTCTGCAATTACACAATATTGAGTCTAAGAATAGAGTTTAATAGAGCCTCATGGCCTGCCTCCATGGAGGCAACAGCCAGGTCACTAAAGAACCACTGCAAAATTAGACACCTTTCCAGGTAAGCACGATGTCTGGAGATTACTTCAAAattggccactaggggcaacagtgagcactatTACCATGAATTAGTAatgtgttcaatcccagtgctaggcactTTAAATGACTtcaccctatcccaaaccttaccCATTTGTGAATTAATGCCTAAACCTCAAAGGTATATGGACAAACGTCCCATTCTGCAGTGAGACAGCTTGTTGCCAAGCCATGGGCTTGGGGCCAGTGAGCAGAGTGTAGGCCTACGGTTTGAAGCAGCCAGGAGGTGCGAGCATAAAGAAAAGTGTTTTTGCCCGTGCCACCGAATCCCACAGCTTAGGTGCGCATATGGCTACCTTCCGAGAATTAATAATGTGCTCTTTGTAAAACATTTGCACATCTAGGCTGCCGATGTTAGTCTTGGCTTTTGTTCAGTGCAGATGAACCCTCTAGAAGCAGCCCTGTAGGAGCGAGCCCACCACAGGGATGAGGAGCGTGAATGCACTGGACTGCAAGGTCACACTGGCTCCTTGAGGAATGGAGACGTTCGTGGTACTGACGTTCGTGGTACTGACGTTCGTGGTACTGACGTTGAGCATCGAGGAACTGGTGAAGTCAGCTTTGGTCACATTCGTAGGAAGGGACTGTGTGGTAGTGTTTTGCGCATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869848 lncRNA upstream 627 50189825 ~ 50190052 (+) True G1634333
TU1869844 lncRNA upstream 5531 50184915 ~ 50185148 (+) True G1634329
TU1869839 lncRNA upstream 11194 50179263 ~ 50179485 (+) True G1634324
TU1869837 lncRNA upstream 12625 50177262 ~ 50178054 (+) True G1634322
TU1869829 lncRNA upstream 21958 50168012 ~ 50168721 (+) True LOC110498072
TU1869882 lncRNA downstream 46301 50238490 ~ 50241199 (+) True G1634359
TU1870246 lncRNA downstream 75449 50267638 ~ 50268044 (+) True G1634681
TU1870258 lncRNA downstream 81414 50273603 ~ 50274264 (+) True G1634693
TU1870272 lncRNA downstream 96948 50289137 ~ 50289357 (+) True G1634705
TU1870279 lncRNA downstream 104646 50296835 ~ 50297054 (+) True G1634712
XR_005037768.1 mRNA upstream 21930 50163645 ~ 50168749 (+) False LOC110498072
XM_036955016.1 mRNA downstream 10880 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA downstream 10888 50203077 ~ 50219556 (+) True iars2
XM_036955018.1 mRNA downstream 51308 50243497 ~ 50265945 (+) False LOC110498078
XM_036955019.1 mRNA downstream 79855 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 110754 50302943 ~ 50335206 (+) False LOC110498377
TU1869832 other upstream 23293 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1012277 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1023126 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1490111 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1512524 48589625 ~ 48678155 (+) True LOC110498046
TU1869885 other downstream 51430 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 415197 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2382744 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2382767 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2382767 52574956 ~ 52576154 (+) True hnrnpua

Expression Profile