RNA id: TU1870246


Basic Information

Item Value
RNA id TU1870246
length 407
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1634681
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50267638 ~ 50268044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtttattgtttttgtttcagtgttcacgTTAAATatcaagatgaacacttaccacgctgcgctttggtcctctccttcatacgacgaccgttacatcaatgttgtgtgacaaaactgcacatattAGTGtagccttttattttccccagcacaagttgcacctgtgtaatgatcatgctgtttaaccagcttcttgatatgccacacctgtcaggtggatggattatcttggcaaagaagaaatgctcactaacagggatgtaaacaaatttgtgcacaaaatttcagagaaataagatttttctgcgtatggaacatttctgtgatcttttatctcagctcatgaaatatgggaccaacactttacatattgcgtttatatttttgttcagtgtaaatgtaGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869882 lncRNA upstream 26439 50238490 ~ 50241199 (+) True G1634359
TU1869850 lncRNA upstream 75449 50190679 ~ 50192189 (+) False G1634334
TU1869851 lncRNA upstream 75449 50190679 ~ 50192189 (+) True G1634334
TU1869848 lncRNA upstream 77586 50189825 ~ 50190052 (+) True G1634333
TU1869844 lncRNA upstream 82490 50184915 ~ 50185148 (+) True G1634329
TU1870258 lncRNA downstream 5559 50273603 ~ 50274264 (+) True G1634693
TU1870272 lncRNA downstream 21093 50289137 ~ 50289357 (+) True G1634705
TU1870279 lncRNA downstream 28791 50296835 ~ 50297054 (+) True G1634712
TU1870280 lncRNA downstream 30896 50298940 ~ 50299387 (+) True G1634713
TU1870281 lncRNA downstream 31843 50299887 ~ 50300164 (+) True G1634714
XM_036955018.1 mRNA upstream 1693 50243497 ~ 50265945 (+) False LOC110498078
XM_036955016.1 mRNA upstream 47831 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA upstream 48082 50203077 ~ 50219556 (+) True iars2
XM_036955015.1 mRNA upstream 98889 50163646 ~ 50168749 (+) False LOC110498072
XM_036955019.1 mRNA downstream 4000 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 34899 50302943 ~ 50335206 (+) False LOC110498377
XM_021574653.2 mRNA downstream 89581 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA downstream 90127 50358171 ~ 50378113 (+) True LOC110498080
XR_002469773.2 mRNA downstream 168654 50436698 ~ 50437783 (+) True LOC110498081
TU1869885 other upstream 12386 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 100252 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1089236 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1100085 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1567070 48699057 ~ 48700568 (+) True G1632650
TU1870554 other downstream 339342 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2306889 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2306912 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2306912 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 2482556 52750600 ~ 52755474 (+) True G1637065

Expression Profile