RNA id: TU1870292


Basic Information

Item Value
RNA id TU1870292
length 212
lncRNA type intronic
GC content 0.66
exon number 1
gene id G1634725
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50311949 ~ 50312160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcgcggccgacaccgacctcggggatgacccggaggacgaggcacagggcgatccggatggagacggtggaactcccgcagcaATGAAGGGTCCAagacgtcctccaccggcacccagcatctctcctccagaccgtacccctcccactccacgaggtactgaaggcccctctcCCAACGCCTCGAGTCCAGGATGGCTCGAACAgcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1870289 lncRNA upstream 3201 50308448 ~ 50308748 (+) True G1634722
TU1870285 lncRNA upstream 7712 50303958 ~ 50304237 (+) True G1634718
TU1870281 lncRNA upstream 11785 50299887 ~ 50300164 (+) True G1634714
TU1870280 lncRNA upstream 12562 50298940 ~ 50299387 (+) True G1634713
TU1870279 lncRNA upstream 14895 50296835 ~ 50297054 (+) True G1634712
TU1870293 lncRNA downstream 735 50312895 ~ 50313098 (+) True G1634726
TU1870295 lncRNA downstream 9920 50322080 ~ 50322354 (+) True G1634728
TU1870296 lncRNA downstream 10533 50322693 ~ 50322943 (+) True G1634729
TU1870297 lncRNA downstream 11051 50323211 ~ 50323433 (+) True G1634730
TU1870301 lncRNA downstream 17922 50330082 ~ 50330362 (+) True G1634734
XM_036955018.1 mRNA upstream 46004 50243497 ~ 50265945 (+) False LOC110498078
XM_036955016.1 mRNA upstream 92142 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA upstream 92393 50203077 ~ 50219556 (+) True iars2
XR_005037765.1 mRNA upstream 143200 50163648 ~ 50168749 (+) False LOC110498072
XM_021574653.2 mRNA downstream 45465 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA downstream 46011 50358171 ~ 50378113 (+) True LOC110498080
XR_002469773.2 mRNA downstream 124538 50436698 ~ 50437783 (+) True LOC110498081
LOC118941376 mRNA downstream 202762 50514922 ~ 50516672 (+) True LOC118941376
XM_021574657.2 mRNA downstream 208235 50520395 ~ 50526363 (+) False heatr4
TU1869885 other upstream 56697 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 144563 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1133547 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1144396 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1611381 48699057 ~ 48700568 (+) True G1632650
TU1870554 other downstream 295226 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2262773 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2262796 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2262796 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 2438440 52750600 ~ 52755474 (+) True G1637065

Expression Profile