RNA id: TU1870373


Basic Information

Item Value
RNA id TU1870373
length 1952
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1634802
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50378224 ~ 50380198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGAATTTAAGCCTTGACACAATATTCAAAGGAAACCTTGTGAactaaaatgcaattgttttcaCAGACAAACATTTTTTAGGAGATTTTACCTTACCGGGTAGAATCAGGATAGGGGGTTTTCTTCACTGTAATATATAGGCTCCTATGGATCCTAAAAGAAAACACAATCCCTCAAGGTCTCAGCAGATTTACAAATCATGAGTAATAGTGAAGTTGTCAAGAGCATGACAAAACTTGTCCACCTTTAGGCTACAGTCAGAAATATCGTCAGACTTTGAGGTGGCTACAAAGTGCATCATGGAACATTATCGTGACATACCATTATTGTAACCAGTATGCTTTATTCCAGAGTAAAAAGCCTACATGTATATCAGCAACCGTACTGCTTTAACAGCTCATAACAATAATACTGAGAAATAAAAAAGTAAACGGCAAGCAAGCCCTCTagtgaaaaacacacacaaactgtttGGTATTTCATGAGAGTGCTGCCCCCTGTTGAGTGTAAGATGTACTGTAGAGTACTACATCACAAACACCAACTAGTGCTCTGGCAGACTCAATGGCAGTGATCAACTACAAGACACTTAAACATATACAAAAACACGTTATAAATTAAGTATAACTGCTACAAATGTAATGAGTTAGTACAGTTTAAATTCCAATGTCAAATAATAGCATTTCATATTTTGGTGTAGCCAAGGTGAAAGTTAGTTGTATTAAAATGTTCTGTGTTGGAACAAGATGGACAAATGACAGAGGGGCTTCTACTATCACATTCTCTGCTCTTGGTGTCTCTAAAACCCTCTTCAGTAAAGAGTGAGAACAGTCACTGTAAGAAGAAATGCATTTAGAGAGGGTAAAGTATTAGTAGACAATGCGTATAATACGGTAGAACAGACTAAAGTATTAAGAAAATAAGTGTGGAATgactaaataaaatgtaaatgctATCTACAAAATAACTATGACAATTCTAAACAAGAGATTCACTTTTGCTTATGAGCCAGATAGAGAACAGTAGATGGCACAAGTAATTATAATTGTGATCACAAGTTCATACACTCTCTCTGGTCTACTCAGTACCCATCACAGCACTTTCACACATACTTAACATCTCCTTTCTGCTTTGTCCATCACCTGCATAGGCAACCATAGCTTCCTATATGTTTTCACAGTATTGATTTAGCAGTCAATTCCAGTCATTCATTCCAGTGTATACCTAACAAGGTAATGTTATAAACAAAGAAAGGAATGGATTAACGAAAAATCCCCGAACCAGAGGAGACACTGCACATTTGAATGAATGCCAGGCATTGCAGATGACTCCAGCTAGGGCCTAGAAATCCTCTGAGGCTTGGATGTGCTTTTGTGCCAGTGACGGCCTTCTTGGGCTGTGTCACATTCCACCTCAGGAATAGAACATGCTACCTGTCTCCTGGCAAAGCAGCATCTCCTTCTGTCTTTAACTTGTTGTGTTTTCTTGCTACTGTGGACTTTCATATAAATCTCTCACCGTCTACACTAACTACAAAGCATCATCAGTAATACCAAAACTACACAATAGTGTGTTCCTGTGCATGGCCAGTGAGGTGTGGGGTCTGTTCCAGTGTTCTGCTCCGCTCCCCCAGGGGCCAGGGTTAGACAGGGGTGACACTGAGGtcctcagacagagagaagccTGAGTCTCTGTCCCGGGTGGGTTTCTCAGACTTGGTGTGTCTCCTCACATCCTCGTGTCCGTAGCTGGCGTGGCGCTTCAGTAGCAGTTTGGGCACACAGGAAGAGGCCGCACCCAGGCCTGCCCCTGAGCAGgaggagaagcaggaggagaaagaggtgCTGGGAGCACAgctggtgctggcactggtgctGGGGCATGGCTCTGGGCCTTTGGGCACCACCAGGGGCAGGCTCTCTGCCTCATAGCTCTGCTCATCGTAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1870364 lncRNA upstream 25933 50352090 ~ 50352291 (+) True G1634794
TU1870306 lncRNA upstream 35578 50342303 ~ 50342646 (+) True G1634739
TU1870255 lncRNA upstream 43020 50332996 ~ 50335204 (+) True LOC110498377
TU1870301 lncRNA upstream 47862 50330082 ~ 50330362 (+) True G1634734
TU1870297 lncRNA upstream 54791 50323211 ~ 50323433 (+) True G1634730
TU1870395 lncRNA downstream 15871 50396069 ~ 50396273 (+) True G1634821
TU1870402 lncRNA downstream 27123 50407321 ~ 50407527 (+) True G1634827
TU1870403 lncRNA downstream 28575 50408773 ~ 50409048 (+) True G1634828
TU1870535 lncRNA downstream 197472 50577670 ~ 50582425 (+) False G1634939
TU1870537 lncRNA downstream 197472 50577670 ~ 50579211 (+) True G1634939
XM_021574653.2 mRNA upstream 111 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA upstream 111 50358171 ~ 50378113 (+) True LOC110498080
XM_036955019.1 mRNA upstream 43018 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA upstream 43018 50302943 ~ 50335206 (+) False LOC110498377
XM_036955018.1 mRNA upstream 112279 50243497 ~ 50265945 (+) False LOC110498078
XR_002469773.2 mRNA downstream 56500 50436698 ~ 50437783 (+) True LOC110498081
LOC118941376 mRNA downstream 134724 50514922 ~ 50516672 (+) True LOC118941376
XM_021574657.2 mRNA downstream 140197 50520395 ~ 50526363 (+) False heatr4
XR_005037769.1 mRNA downstream 140271 50520469 ~ 50525999 (+) False heatr4
XM_036955024.1 mRNA downstream 140271 50520469 ~ 50526363 (+) True heatr4
TU1869885 other upstream 122972 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 210838 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1199822 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1210671 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1677656 48699057 ~ 48700568 (+) True G1632650
TU1870554 other downstream 227188 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2194735 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2194758 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2194758 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 2370402 52750600 ~ 52755474 (+) True G1637065

Expression Profile