RNA id: TCONS_00049719


Basic Information

Item Value
RNA id TCONS_00049719
length 659
RNA type processed_transcript
GC content 0.50
exon number 5
gene id XLOC_025174
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15685362 ~ 15719823 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAAGGGAGGGCATGTTGGAGAGAATCACGAGAGCCCAATAGGCCATTGGCAGTGGTGAAGAGATTAATGGGAGAGGAGCCGTCTGTAATAAGAGTAGACTTCAGACCCAAAGACTGCAGGAGCTTCACCTGGAAGACAAAACGTCGTACACCTGCACGGTGGCGTTGTGTGGGATACGATAAGACACCACTCTGGTTTTATCCCGCTCCGCCTGCCCAAAGCTCCTTCCTCGATCTGAGCGGTCAGCCAGCGGATCACGGGACTGCGCCAGAAGAGACTCTACATTGGCCGGAAGCTCTTTCTCCCACAATTCCTCATCCTGCGTCAGCATGCGTTTTCTTATCACGTAAACATGAAGACAAACATTTTGGGAATGCTCATGGGGTCATATCAACTATTCAGAATAAGGGTCAAAGGCTTGTGAAACAGGAAGCAAACATGTCCTGTACCCCCTGAGTGTCAATGAAGGCCTCGACGGCGCGCAGCACAAGCCCTTCCTCCTCAGACAGCACATACACATCCTGAATGCCGTTCTCCAGATGCTCACCGGGCATGAGGAAGAATGAACGCTCACCCTATTAGATGAGGAGACACAGAGAAGAGGTTTTTATCAGTATATGCTATACCTGCAGCAatcacatacattcattcattca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052626 lncRNA upstream 44636 15639452 ~ 15646667 (+) True XLOC_025173
TCONS_00052625 lncRNA upstream 69549 15618278 ~ 15621754 (+) True XLOC_025172
TCONS_00052332 lncRNA upstream 173404 15517552 ~ 15517899 (+) True XLOC_025170
TCONS_00049715 lncRNA upstream 185146 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA upstream 185146 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00052333 lncRNA downstream 146098 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00049732 lncRNA downstream 335186 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052630 lncRNA downstream 433401 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00052631 lncRNA downstream 466770 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA downstream 510104 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049717 mRNA upstream 83137 15550522 ~ 15608166 (+) False XLOC_025171
TCONS_00049718 mRNA upstream 83270 15550544 ~ 15608033 (+) True XLOC_025171
TCONS_00049714 mRNA upstream 265614 15394428 ~ 15425689 (+) True XLOC_025168
TCONS_00049711 mRNA upstream 298837 15358459 ~ 15392466 (+) False XLOC_025167
TCONS_00049713 mRNA upstream 298859 15360879 ~ 15392444 (+) True XLOC_025167
TCONS_00049720 mRNA downstream 16988 15736811 ~ 15746999 (+) True XLOC_025175
TCONS_00049722 mRNA downstream 54168 15773991 ~ 15795396 (+) False XLOC_025176
TCONS_00049723 mRNA downstream 56623 15776446 ~ 15795110 (+) True XLOC_025176
TCONS_00049724 mRNA downstream 86094 15805917 ~ 15811037 (+) False XLOC_025177
TCONS_00049725 mRNA downstream 89275 15809098 ~ 15809943 (+) True XLOC_025177
TCONS_00049704 other upstream 1006700 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049690 other upstream 1291651 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049684 other upstream 1446519 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 1833587 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 2284765 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049721 other downstream 35900 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 653189 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049741 other downstream 849442 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049746 other downstream 948780 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049749 other downstream 1004791 16724614 ~ 16729015 (+) False XLOC_025193

Expression Profile

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