RNA id: TU1872197



Basic Information


Item Value
RNA id TU1872197
length 4236
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1636460
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52323997 ~ 52329189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCTTGTGTCACCGTCAGATTCTCAGTCCGTTTGTCTGTCAGAAGTGCTTCTGATGATGGagttacacacagacatgggTCAGGTTGAGCAGGCACAATTAGGAGGAAATGTTTTTGGTCCAACTATGTTAGTTtcccatttcaaaagggtttatTTCCCCCTGTTTGTGCCTCCTGAAAGCACACACACCCTGCCCAGCCACCGCACAGTAAGGCCTAGCTAGCATGGGATGGACTACAGGTCAATCCCATTTCTATTCAGTCTTTTCAGGAGATGTTTTGGCTGAATATCATTTCCCTTCCTAAAATTGACTGATGAGGCCAACCCTGCCAGCTACagtacctctcccactccccacAGACTGTAAAGCCAGAGAACCAAGACACCAcgacaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagtactttgagatatcagctgatgtaagaagggctatacacCGGAGTGAGACGTTTCCATGGGTTGCCCAGGGTGTATTCAGGAAGGTGAGACGTTCGATTGTTAGAAATGCAGCGAAGAGAGTGGACTCAATTCCCTGTTATACAAAACAGACAATCTGTTCAACATGATACATTTATATGTGCAGGTTTTGAAACGTTGCACCATCCTGAAAGTGACCCTGGAGTGTACCATCGTCAACAGGCTCCAGGTTGAAGTTAGGAACAGACCTAGGACCAGATTACCCACCCTGAGTCCTAATCATTAACCATTAGAGGGTACagaactgaccttagatcagcctCCAGGGACAACTTCTTCCTACTCCCATCAATCAAACAGATGTAACAGTTGCAAACAAAAACAGCACAGGAAAAATTAAATatctaaaataaaaatgataAGTGTCTATATGTTGGAATATACCTCTATATGAAATGGACTCAGCAATTATTTTCTGTCTATTTTTTAAATGCATAGTAGCTTTGCAGACCAGAAGGTGTGTGGATAATAAATGATACAATATAAGCAACTTTCTGTTCCAGCCCGTCTTGAGTTAAATTAACAAGATCCTTCATTCATGACCAtgacagaggggagaggtcaaagggTAAAGGGCATGAGGATGATAATAAGAATAATACAAATGATACATTTCATGTtaatacaacgggtgggtctaatcctgaatgctgattggttaaaaccacattccagtCGGTGTCCATTCcaagttaccactggctaaatctatAACGTTAAAATGCCTTTTTACTCAGTTCCATCTGActtcgtctcgggcctaacacccgtgccaatatatcttccagacaccggcttctctggcattaccACTTAAATAAACGCCTTTCAAAACACCCAAGAACACTGTACATAATACAATAGGTTGATGAAGAAGAAGCATTTGTGTCttaaagttattttaggaaacaGGCTATATGCATATAGTTATACAAACATTTAGATTGGAAATGGTCTCAagcaccatatatatatatatatatatatttacaaactATTCCCAAAGTGAATGCACCATGACAGTGGCACCAAGCAGAGTGAATGGGAGGTTTTTCTCTACGCTCATATTGAGCTCAGATATCCatctgtgtttacacaggcagtccaattctgatctttttcatttattttttaacctaattggtcttttgacctaTCGGTTTCAGCTcggaaaaagatctgatgtgattggtcaaatgaCCAATTAGTGTAAAACAGATCAGAATCAGGCTGCCTTCTAGTTGACGTCTCTCTGTACCTCTTGATCATCTTCGCACCTTAACCAAACCGGCtctgcgcatgttgattttgtctgtCCCCACCAGACGagatcatgacacgcaggttaatTAAAATACCAAAAACAActgtgaaccaactatattaatgtGTGGACATGTGGAAACACTGCTGTTGCTAGTTTGTCCTGGGAGATAAACATTGGCTTGTTATTTTAACTGAATTGGTTCATTTTATTCCTGGGTCTTTGTCGAATTGTGTGTTTCTCTACTCTGACGATTAATTCCCAGATAAAAGGGGAAACCTGGTTCGTTTTTAGTTAGTTATCTTTGATgaatctctcctctcatctttcaatcacccacatgggttAGTATGCTTGTGAAAACCAATGAGTAGATGAGAGAGGCGGAACATGAATCGTTTCGAGCTTCTCAAATAAAGTTATATTTTAGCAGCTGGATATGCAGACGCTCGTTCACGTGCGCGAGCAGTTTGGATGAAACGATTGAATAACATATATGTGTAACCTTAGCAAACAGTTTCTTATCAACAgctagtttgttgatagtatgacatgatagtagagcatctacagatgctATCCAAAcgatccaaataaagtgtgaccatttattttgcaacactcaACGAACGCAATGTGGACGGTCTGGTCAAGGTGTTGGTAGGAGCAGGGATTGTGTACGGTAGGCCTGAACCCACAACTGCCAAAACCATAGCCCGAGTGGTGACAAGGAAATCAATGGTCCATAAGAGAAACCATGTTTTGGCTTAGCATTTCACCACCACCATTCACATTGTCTGTCCTTACAGATggaggatcttcatttgatcaccctgttgcaggaaaacattttaaacatgtagtgtattttgggtttaaaaaggcttctgaagtttgtaatttatacttagaaatgtcagacttgattttcccttacgaaaaatgtaatcaacccctacaaaagtGTATGTTAAttttaatccacataataattcacatttcctgtggctgcaggattattttcctgctgtagaaaactgtctcaaatgaagatcctacacctgtatatagcatccCCTAAAGCACTTCGTGTGGTCCCACTTTCTTCAGAGAATTAAAAAAACACGTAGAAAAACGAACACGCAACAGTTCATATGTTGCATCATAACTAGTGTAGAACTATAGAAGTACAAACCACTGAGAACAGCTAGGCAGGGAGAGGAAACAGAGTCAAACTTTTTTCATGTGATTTTGACTTTGAAGATCTATCATTTTTTTCAGCGAGCACCATTTGTCCACAAATACAGGAGAAATGTTTCAGATGTCAAAGTGTTCACAAGGCacttgtctctctcacacacggtTGGTTGTCTTTCCTTTCTGTCATTCTTCTCTCTTTGTTTCCCTACGTGACTAATAGCCATCCGGCAGCCAGGCCTTATTCAAAGCAAGCAAAACTTTATTTACAAACTCCAACAACTGCTCTGCAaaagtgatcttcctgtccggtggCAGGTATACTCCTTCTttaaaacactctctctctcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTTAAAacactctctctactcctcttcaGGTATACTCCTTTTTTAAAacactctctctactcctccttttcttcctcctcctcttcagGTATACTCCTTCTTtaaaacactctctctcctcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTTAAAacactctctctactcctccttttcttcctcctcctcttcaggtaTACTCCTTCTTtaaaacactctctctcctcctcttcaggtATACTCCTTCTTTAAAacactctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1872174 lncRNA upstream 32204 52288911 ~ 52291793 (+) True G1636442
TU1872124 lncRNA upstream 167986 52155291 ~ 52156011 (+) True G1636396
TU1872118 lncRNA upstream 177452 52144722 ~ 52146545 (+) True G1636390
TU1872053 lncRNA upstream 222269 52099568 ~ 52101728 (+) True G1636327
TU1872038 lncRNA upstream 331945 51991740 ~ 51992052 (+) True LOC110498383
TU1872211 lncRNA downstream 20872 52349604 ~ 52355243 (+) True G1636468
TU1872226 lncRNA downstream 60054 52388786 ~ 52390094 (+) True G1636483
TU1872364 lncRNA downstream 330576 52659308 ~ 52661396 (+) True G1636602
TU1872362 lncRNA downstream 332982 52661714 ~ 52663784 (+) True G1636601
TU1872383 lncRNA downstream 345869 52674601 ~ 52674995 (+) True G1636620
XM_036955049.1 mRNA upstream 173846 52118468 ~ 52150151 (+) False LOC110498094
XM_036955055.1 mRNA downstream 232991 52561723 ~ 52576112 (+) False hnrnpua
XM_036955056.1 mRNA downstream 232991 52561723 ~ 52576112 (+) False hnrnpua
XM_021574683.2 mRNA downstream 255386 52584118 ~ 52600076 (+) True LOC110498099
XM_036955059.1 mRNA downstream 283864 52612596 ~ 52646891 (+) False LOC110498100
XM_036955058.1 mRNA downstream 283864 52612596 ~ 52646892 (+) False LOC110498100
TU1870554 other upstream 1713518 50607386 ~ 50610479 (+) True G1634948
TU1869885 other upstream 2068745 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 2156611 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 3145595 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 3156444 49163954 ~ 49167553 (+) False zgc:193593
TU1872309 other downstream 246201 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 246224 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 246224 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 421868 52750600 ~ 52755474 (+) True G1637065
TU1873027 other downstream 588605 52917337 ~ 52918478 (+) True G1637178

Expression Profile