RNA id: TU1872362


Basic Information

Item Value
RNA id TU1872362
length 2038
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1636601
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52661714 ~ 52663784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcacttgtgatatactgtatatataacattGCAAATTTAGGCTTCTCTTATATCAGAGGATAAAGAGTCAAAAGAAATGTCATAGCGTTGGGGTGAAGGGGTTTAGCTTTCAGATCCTTCATGTGACTGCTGGATGGACTAATGTTAAAACCCACTCTGCATCTCGTTACAGTTTGTACCTCCGCTCACGAGGTGAGAATACAGTTGACATTTCTCTTCAATGGAATTTCAAAAAGAGGCAATCTGCAGTtgttacatccatttttggatgtttaaatgaatgatatacaCCCACTGATTCATTTGAGagctggttacatttctccagtcccatTCCTATTTACCAAAACTGTGGCGGGGACACCACTTTGTTGTTgcttgaactgcagattgcccctttaagtattAACTTCAAATGTCTAATAAAAAGGAGATTCACTACATTTTGATAGAACTTCAGGGACCAATTAACATTTTAAATAATATTCCAGAGTTTCAAAGGAAATAACTTGTAAAACACTGCTCCCACAACCTTATTTCATCTCCCAAAGCCATGGACTCAGTATGTAAATGATAGACCCTATTACAGATCTAGATCTTTATCCCCCAAACACAAATCAATGACCAGCATAAAACATACCAGATCCAACATCCACACGTTACATAAAGACCATACATCACACTGCTACTTCCTCAAACAGTTCTAGAACCAAAGACAACCATTCTGCTAACACACATCACCACAGTCAGTCACCAAACTAACCTCCAACGTGCAAAATCTCCCAGTGAGCACTTGATGTTAAAAGGACATTGAGAAAAGCAATTTCAACCAATTTTGCTCCCTGGGCTTCTCATAGTGGAACCATCCTTCAACTTACAATTTAAAACCAACGGCTATTACTTTCGCACAGACCACGTCGTCATAACGACGGTGCTTCATCTTTCAGATCAGCcggaaacatgcacacacacagatgtgcatatacacacacgcacagggaTAATTGTTCTCCCAGCCTATACTGTAAATTGCCATGGTTAAATTCAGCTTCAAGGGCcaaaacacaggcacacacacacacacacacacacacaaatcttctCACAGGTACGTCCATGTCCACTCTGCAGTCCCTGAGATCACCTCACACTTACACAAGGCATTCTCGTCAGAGCTCAACAGAGGGAGAAACTTGAATAAAACCACTAAGAAATATAACAAAGAAAAATAAACCCATGAAGGCACATTCTGGAAGAATCCATCATTTCAGATGAATGACTTTACACAGGGGATAGATACAGTAACTGTTAAAATGTCAGTCCACAAAAAGGACTGATAATATCATTTAATTAAAAGGGACAGTTCCATTCAAAAATAGGGGGGGGGGTGTGACCAGAGTTTGATGACATCAGAGAGCGTGATGTCATTACTTCAGAACCTGAACCTTGGCCCGAGGAGAAACAGTTCCTGTGGGCCACTTCATACAGACAGCAACACTCTGTAGACTACTTCAGGTGCTGTGGAACCACTCAGGGCCTGTGCCCAATCCATGCCACCAGTGCTGTGTCCAGATGGGGAGACAGCAGGGGCTTGTTGGGTAAAGGTCTTCCCTATTGAAATGAACCCAGACAGATCTAACACAGAGCACTAAGGTACTGCTCCATAGCTATGGGTGGGCATAGGACAGGGACCGTTTTCCATTAGATGCAGTTGTATTGCATAGTTAgggggagattgagagagagggtgcTAAGCGAGACGGAGGCTTAGAAACAGGATGTGTGGGTTTTCTAGTTTTCTAGGATGTGTAGAATAATGGTCTCTCCCAGCCAAGCCTGTTTCTCTCCAGTTCAGCTGCTCCAGGACTTGCGGTTCTCCCCTCTCCTGATAGTGGACTCTCCCCGCAGAACGGGCTGGTAGAACTCGCCGCTGCACCGGTTCTCCGGGTTCCGTTTGGTGGAATGCTCCCGTCGGAGAACCCGGTCGGGACGCACCAGGACACCGTAACCAGGGTTACAGCGGAAGTAGTGGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1872364 lncRNA upstream 318 52659308 ~ 52661396 (+) True G1636602
TU1872186 lncRNA upstream 26678 52304685 ~ 52635036 (+) True G1636452
TU1872226 lncRNA upstream 271620 52388786 ~ 52390094 (+) True G1636483
TU1872211 lncRNA upstream 306471 52349604 ~ 52355243 (+) True G1636468
TU1872198 lncRNA upstream 332525 52323997 ~ 52329189 (+) False G1636460
TU1872383 lncRNA downstream 10817 52674601 ~ 52674995 (+) True G1636620
TU1872392 lncRNA downstream 18496 52682280 ~ 52684869 (+) False G1636629
TU1872394 lncRNA downstream 18496 52682280 ~ 52685726 (+) True G1636629
TU1872424 lncRNA downstream 57796 52721580 ~ 52722677 (+) True G1636658
TU1872884 lncRNA downstream 72658 52736442 ~ 52736745 (+) True G1637054
XM_036955061.1 mRNA upstream 14822 52618776 ~ 52646892 (+) True LOC110498100
XM_036955060.1 mRNA upstream 14823 52614695 ~ 52646891 (+) False LOC110498100
XM_036955057.1 mRNA upstream 14824 52612603 ~ 52646890 (+) False LOC110498100
XM_036955070.1 mRNA downstream 131536 52795320 ~ 52835776 (+) True LOC110498105
XM_021574699.2 mRNA downstream 382461 53046245 ~ 53061764 (+) False LOC110498109
XM_021574700.2 mRNA downstream 382477 53046261 ~ 53061762 (+) False LOC110498109
XM_021574701.2 mRNA downstream 383213 53046997 ~ 53061762 (+) True LOC110498109
XM_036955074.1 mRNA downstream 403033 53066817 ~ 53092156 (+) False LOC110498110
TU1872308 other upstream 85560 52574956 ~ 52576154 (+) True hnrnpua
TU1872309 other upstream 86097 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other upstream 86097 52574956 ~ 52575617 (+) False hnrnpua
TU1870554 other upstream 2051235 50607386 ~ 50610479 (+) True G1634948
TU1869885 other upstream 2406462 50243619 ~ 50255252 (+) True LOC110498078
TU1872895 other downstream 86816 52750600 ~ 52755474 (+) True G1637065
TU1873027 other downstream 253553 52917337 ~ 52918478 (+) True G1637178
TU1873637 other downstream 766220 53430004 ~ 53430560 (+) True G1637730
TU1874669 other downstream 1511012 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 1576472 54240256 ~ 54240751 (+) False G1638780

Expression Profile