RNA id: TU1873149


Basic Information

Item Value
RNA id TU1873149
length 3118
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1637293
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53116727 ~ 53119961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGTTTGTTTTCCATTTATTTTGCAGAATAGGTTAGAGTCAATGTACTGATCCACAGTCAATGAGCGTGAATGGAATAGATTCTCTGCTAGTCTACATACACACTGAACACCAGCTAGAACACAATATGGCAACCGCACTTTACCACAATGCATTAAGAGCAGGGCTGAGGTAAATTTGAATTGGAGTTAACTTAAATAACTAAAAAGTttagaaaaaaacagcttctattgtCAATGACTTCTCAATAAAATGAGGAATAAAAGCTATTTCAAACATTTTATATTTTCTTattttaaattaaaatcacttcctgaattgactgccttcaattgaaattgaccccagccctgatTGAGACAGTTACTGCCAAGGTTATTAACTCTTCTTTTATATTTAAATATCAACAAGCAAAATATATGTACATTAACAGATTAACCATTCTATTTCCAGTGAGTTAATATGGGGAGGCTTGTCATGGACATTTTCACATGCGACACCTCTTGTTGTCGCCTATCGAAGTTTATTCACAATCGAGGGAACTGTATGTCCCCATTTAAGATTAAATGTCAAAACATGTACAGAGAGTTGCTCTGCAACCAAAACCAAACAACATAAAATGTAGGAATATTAAATTAAACATGTCTGTTCAGTACAGGAACTAGTATGTATGTAAAACATGGGTAGTCTGCAACTACTGTGGTCCCAGCTAGTAATCAAGTTGTGTAATATGGTACAATCTAGTCCTGAGCACTATGAATCAGATTTAATACTATAATaggaatgtgtgtgagagagagagagagtgtaaaaaGTAGCTGCATTGTCCTTAACTGTAATCCAGCAGTGCCATCCCCCTTACAATGGCACCTCATCACAGGACAAGTTGTGTTTAGTACAATGACGACTGTGTGTGTCGACCACATCTACCTCTGTGTGAGAGCCATTTGGTAGCCTGCTGTCCATGACAGATAAAAGACACAGGACATCAGGAGCCATCACCCCATGAGCTTCATAAACCCCTCTGCTGTCTGTCAGAGATCAAACAGAAACCGGACCACTGGCTTTCACACACACTTCTGTCCCCCTTACCTCACCTCTCCTGCTGCCTGTCCTGCTGAGAGGACAGACACATTTCCTGCTCTACTGCAGCAAACAACAAAAAGTTGAGTGTGAAGGCCTGAGGGCTCAACCCAAAGATTAGCCACAGAGCGATGGAGGTTCACATCTTAAGTGTGATCTGTGGAGCTAAGATAGTTATCCATTTTATaactaagcaataaggcccgagggggtgtggtatatggccgatataacatggctaagggctgttcttaagcatgacgcaacactggagtgcctggatacagccctcaGCTGtattatattggccatataccacaaacccagtggtaccttattgctattataaactgattaccaatgtaattagagcagtaaaaatacatgttttgtcataccgtggtatacagtctgatataccacggccgtcagccaatcagcattccggGCCTCGAACCATCCTGTTTATAATGGCATCACACTGTAGACCATCGACATGAAGACAATGTGCTGTAAGTAACTGATATGGTTtcaagctgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacatatactcccAGAAACCATCATTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCGTTGTTGCCACGTTACCGGCTGTCCCACGTCAACCCCCCGTTGTTACCACGTTACAGGTTGTcccacatcaccccccccccattGTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCATGTTATAGGCTGTCCCACATCACCCCCCCCCGTTGTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGAGGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTAACGCGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTAACGCGTTACAGGCTGTCTTGAGATGGGGACAGTGGATCATCCCTACGTGAGGGCTCTTAGCATATTCCTGGGTTAGCACCATTTTGAATTAAGTTTTTCCTCCCACATTGGAAGTCCTAAAAAGTTTACATGTCTTTGACTAATAAGCAATTATGCGTTTAAGAAATTGTTCACCCTTTAACCATGCAAGGAGATGGAATGTAAGCATAACAACTATATTCACATTAACGATAAGTGAAAGAAATCCTAAAGATCCACATTACTGTGTGTAGTCCCCTCTCTCAGTTGTTTTTAAATAACTTTCTGTACAATTCACACAGAGGAAAACCAAGTGAAACTTATGAACAGAACCTTCATTTTGTCAATAATCCTCTTAATGTTGTGAACACTCATTACAatcattgttttttaaaatgtcagATGGTGTCAGAAGTCTAAACACAGTTTCCTCATGAGCATTTGCGGGCTTGGTCTAAAGAGCAGTGATATGACGTCATGTAACATTCCCGGAGTGAAGGGTGTGCATGTTGTCATGGCAACCCCCAGACTGTCCAGCCAAAGCATTGGGCAGCGACACTTGATTCTTCTGTAGCGCAGGCACAAGCTTGATGATGAACATGATGATTTCGTCCCACAAACCAGCAGACGTGGGGAGGTGGAGGTTTCCATCCCAGATCAGTGCCTGTGTTGACCTTTGACCTTCAGTCCATGATGAAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1873064 lncRNA upstream 3455 53106810 ~ 53113272 (+) True LOC110498111
TU1873033 lncRNA upstream 188995 52927353 ~ 52927732 (+) True G1637184
TU1872943 lncRNA upstream 274240 52840946 ~ 52842487 (+) True G1637109
TU1872939 lncRNA upstream 327205 52789317 ~ 52789522 (+) True G1637105
TU1872932 lncRNA upstream 337955 52778542 ~ 52778772 (+) True G1637098
TU1873527 lncRNA downstream 132818 53252779 ~ 53253015 (+) True G1637627
TU1873531 lncRNA downstream 135042 53255003 ~ 53255733 (+) True G1637631
TU1873537 lncRNA downstream 221620 53341581 ~ 53342220 (+) True LOC110498114
TU1873616 lncRNA downstream 281449 53401410 ~ 53401684 (+) True G1637710
TU1873631 lncRNA downstream 302041 53422002 ~ 53446973 (+) True G1637724
XM_021574704.2 mRNA upstream 3275 53106681 ~ 53113452 (+) False LOC110498111
XM_021574705.2 mRNA upstream 3275 53106681 ~ 53113452 (+) False LOC110498111
XR_002469775.2 mRNA upstream 3275 53106685 ~ 53113452 (+) False LOC110498111
XM_021574703.2 mRNA upstream 18762 53066819 ~ 53097965 (+) True LOC110498110
XM_036955074.1 mRNA upstream 24571 53066817 ~ 53092156 (+) False LOC110498110
XM_021574706.2 mRNA downstream 139769 53259730 ~ 53342222 (+) False LOC110498114
XM_036955082.1 mRNA downstream 201426 53321387 ~ 53342222 (+) False LOC110498114
XM_036955083.1 mRNA downstream 222512 53342473 ~ 53444115 (+) False LOC110498117
XM_036955086.1 mRNA downstream 222512 53342473 ~ 53444115 (+) False LOC110498117
XM_036955088.1 mRNA downstream 222512 53342473 ~ 53444115 (+) False LOC110498117
TU1873027 other upstream 198249 52917337 ~ 52918478 (+) True G1637178
TU1872895 other upstream 361253 52750600 ~ 52755474 (+) True G1637065
TU1872308 other upstream 540573 52574956 ~ 52576154 (+) True hnrnpua
TU1872309 other upstream 541110 52574933 ~ 52575617 (+) False hnrnpua
TU1873637 other downstream 310043 53430004 ~ 53430560 (+) True G1637730
TU1874669 other downstream 1054835 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 1120295 54240256 ~ 54240751 (+) False G1638780
TU1874742 other downstream 1120295 54240256 ~ 54240751 (+) False G1638780
TU1875462 other downstream 1848396 54968357 ~ 54969610 (+) True LOC110498128

Expression Profile