RNA id: TU1873639


Basic Information

Item Value
RNA id TU1873639
length 441
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1637732
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53448552 ~ 53448992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTACATTTCTCTGATGGTTTTAATGTTGTTTTAAAGCCTTTCTCAATGAATTAATTTAAGAATATTAAATACGAAATCTTAGAATGATTTGTAACCATGCGTAAATTGCGCAATTACGCATCACGATGTATTAATTAAGGTGAAGGGGCTGATAAGTGTCACAATATCTTGCTTTATAGTCAAGATTAGGAGAGGTCTCGCTCTCACACAGTCCTTGACTGTCAACATAACACTACATCCTGGTGATTAATTTCATCATTATCTCTTGTTTGAAATTATGggtagcctacacacacattGAATTTCTAAAGATTCGGAAAAACTAGGAATTGTGATTGTAGGAATTGGCTATTAAAATTGCATTCCAGGGCACGGCATCAGATGTTGAATGAATACATTTGGATTGATATAATTTATCTCTACATCGGCTATGTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1873631 lncRNA upstream 1579 53422002 ~ 53446973 (+) True G1637724
TU1873616 lncRNA upstream 46868 53401410 ~ 53401684 (+) True G1637710
TU1873537 lncRNA upstream 106332 53341581 ~ 53342220 (+) True LOC110498114
TU1873531 lncRNA upstream 192819 53255003 ~ 53255733 (+) True G1637631
TU1873527 lncRNA upstream 195537 53252779 ~ 53253015 (+) True G1637627
TU1873640 lncRNA downstream 837 53449829 ~ 53450127 (+) True G1637733
TU1873790 lncRNA downstream 20623 53469615 ~ 53469820 (+) True G1637872
TU1873819 lncRNA downstream 79542 53528534 ~ 53528860 (+) True G1637901
TU1873898 lncRNA downstream 157975 53606967 ~ 53609407 (+) True LOC118941378
TU1873900 lncRNA downstream 160719 53609711 ~ 53611728 (+) True G1637975
XM_036955083.1 mRNA upstream 4437 53342473 ~ 53444115 (+) False LOC110498117
XM_036955086.1 mRNA upstream 4437 53342473 ~ 53444115 (+) False LOC110498117
XM_036955088.1 mRNA upstream 4437 53342473 ~ 53444115 (+) False LOC110498117
XM_036955089.1 mRNA upstream 4437 53342473 ~ 53444115 (+) False LOC110498117
XM_036955090.1 mRNA upstream 4437 53342473 ~ 53444115 (+) False LOC110498117
XM_036953848.1 mRNA downstream 158341 53607333 ~ 53609550 (+) False LOC118941378
XM_036955105.1 mRNA downstream 1268781 54717773 ~ 54815955 (+) False LOC110498124
XM_036955103.1 mRNA downstream 1268783 54717775 ~ 54815955 (+) False LOC110498124
XM_036955104.1 mRNA downstream 1268783 54717775 ~ 54815955 (+) True LOC110498124
XM_021574721.2 mRNA downstream 1463468 54912460 ~ 54923456 (+) True LOC110498125
TU1873637 other upstream 17992 53430004 ~ 53430560 (+) True G1637730
TU1873027 other upstream 530074 52917337 ~ 52918478 (+) True G1637178
TU1872895 other upstream 693078 52750600 ~ 52755474 (+) True G1637065
TU1872308 other upstream 872398 52574956 ~ 52576154 (+) True hnrnpua
TU1872309 other upstream 872935 52574933 ~ 52575617 (+) False hnrnpua
TU1874669 other downstream 725804 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 791264 54240256 ~ 54240751 (+) False G1638780
TU1874742 other downstream 791264 54240256 ~ 54240751 (+) False G1638780
TU1875462 other downstream 1519365 54968357 ~ 54969610 (+) True LOC110498128
TU1876918 other downstream 2478656 55927648 ~ 55930295 (+) True LOC110498153

Expression Profile