RNA id: TU1874741


Basic Information

Item Value
RNA id TU1874741
length 451
RNA type TUCP
GC content 0.53
exon number 2
gene id G1638780
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54240256 ~ 54240751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCCTTGTCCTCCAGATGccaaaccctggtcctccagtacgcccaaacctggtcctccagtatgcccaaccctggtcctccagtacgcccaaccctggtcctccagtacgcccaaccctggtcctccagacgccaaaccctggtcctccagtacgcccaaccctggTCCTCCAGTacgcccaaccctggtcctccagtatgcccaaccctggtcctccagtacgcccaaccctggtcctccagacGCCCAACAATACAAAATGTGTTGTAAACCCTGGAGAAACCCACCAGGGAAACACTGATCTAAAACAAGAAGAATTCACACATCCATATTTACCCCAGCCTTTCAAACAACTGATTCAGATTTATATCAGACAATCGATCTCCTCATATACATACATCCTAATCCACCATCAGGCTACCACAGAAGATGCATCATGGGTTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1874715 lncRNA upstream 20710 54219306 ~ 54219546 (+) True G1638755
TU1874702 lncRNA upstream 32641 54207373 ~ 54207615 (+) True G1638743
TU1874664 lncRNA upstream 72416 54167356 ~ 54167840 (+) True G1638705
TU1874660 lncRNA upstream 74224 54165795 ~ 54166032 (+) True G1638701
TU1874657 lncRNA upstream 75154 54164579 ~ 54165102 (+) True G1638698
TU1874774 lncRNA downstream 14450 54255201 ~ 54255416 (+) True G1638805
TU1874789 lncRNA downstream 22992 54263743 ~ 54264127 (+) True G1638819
TU1874832 lncRNA downstream 51316 54292067 ~ 54292339 (+) True G1638860
TU1874871 lncRNA downstream 82689 54323440 ~ 54326229 (+) True G1638899
TU1874875 lncRNA downstream 87237 54327988 ~ 54328231 (+) True G1638903
XM_036953848.1 mRNA upstream 630706 53607333 ~ 53609550 (+) False LOC118941378
XM_036955093.1 mRNA upstream 796141 53342473 ~ 53444115 (+) False LOC110498117
XM_036955105.1 mRNA downstream 477022 54717773 ~ 54815955 (+) False LOC110498124
XM_036955103.1 mRNA downstream 477024 54717775 ~ 54815955 (+) False LOC110498124
XM_036955104.1 mRNA downstream 477024 54717775 ~ 54815955 (+) True LOC110498124
XM_021574721.2 mRNA downstream 671709 54912460 ~ 54923456 (+) True LOC110498125
LOC110498386 mRNA downstream 724084 54964835 ~ 54968539 (+) True LOC110498386
TU1874669 other upstream 65126 54174796 ~ 54175130 (+) True G1638710
TU1873637 other upstream 809696 53430004 ~ 53430560 (+) True G1637730
TU1873027 other upstream 1321778 52917337 ~ 52918478 (+) True G1637178
TU1872895 other upstream 1484782 52750600 ~ 52755474 (+) True G1637065
TU1872308 other upstream 1664102 52574956 ~ 52576154 (+) True hnrnpua
TU1875462 other downstream 727606 54968357 ~ 54969610 (+) True LOC110498128
TU1876918 other downstream 1686897 55927648 ~ 55930295 (+) True LOC110498153
TU1877589 other downstream 2259406 56500157 ~ 56505897 (+) True G1641405
TU1877600 other downstream 2269178 56509929 ~ 56511097 (+) False G1641407
TU1877601 other downstream 2269178 56509929 ~ 56511097 (+) True G1641407

Expression Profile