RNA id: TU1875461


Basic Information

Item Value
RNA id TU1875461
length 300
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1639477
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54945322 ~ 54945724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAGCAAACTCTTCCACAATCTGATCTTTTGTTTTACTCTTGGGGATGGAACCAACGAACAGTCTATTATTGGCCACAGAGATGCACACGCCAATATGTTTGCCGGGTCGAATTTCATTGTTGTTACACAGCTTGACAGCCTCCTGTGCCGCCTCTTTAGTGCAGAAAGTGACAAAGGCGTAACCTCTGTTGAGGCCACTGAGTGGATCCATCATCAGACGCAGGTCCCAAATGGGCCCAGCTTTCTCAAACAGAGGTACCAGCTCATCCTCAAATAGATCTCTGGGGATCTTGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1875459 lncRNA upstream 2830 54941208 ~ 54942492 (+) True G1639475
TU1875474 lncRNA upstream 16530 54928557 ~ 54928792 (+) True G1639490
TU1875442 lncRNA upstream 66867 54878067 ~ 54878455 (+) True G1639459
TU1875441 lncRNA upstream 67541 54877249 ~ 54877781 (+) True G1639458
TU1875431 lncRNA upstream 85769 54859115 ~ 54859553 (+) True G1639448
TU1875511 lncRNA downstream 58197 55003921 ~ 55004629 (+) True G1639522
TU1875542 lncRNA downstream 99095 55044819 ~ 55045070 (+) True G1639549
TU1875543 lncRNA downstream 99440 55045164 ~ 55045469 (+) True G1639550
TU1875544 lncRNA downstream 100125 55045849 ~ 55046055 (+) True G1639551
TU1875547 lncRNA downstream 103185 55048909 ~ 55049135 (+) True G1639554
XM_021574721.2 mRNA upstream 21866 54912460 ~ 54923456 (+) True LOC110498125
XM_036955105.1 mRNA upstream 129367 54717773 ~ 54815955 (+) False LOC110498124
XM_036955103.1 mRNA upstream 129367 54717775 ~ 54815955 (+) False LOC110498124
XM_036955104.1 mRNA upstream 129367 54717775 ~ 54815955 (+) True LOC110498124
XM_036953848.1 mRNA upstream 1335772 53607333 ~ 53609550 (+) False LOC118941378
LOC110498386 mRNA downstream 19111 54964835 ~ 54968539 (+) True LOC110498386
XM_021574729.2 mRNA downstream 22584 54968308 ~ 54969856 (+) False LOC110498128
XM_021574730.2 mRNA downstream 28968 54974692 ~ 54987042 (+) True LOC110498129
XM_021574731.2 mRNA downstream 42014 54987738 ~ 54996574 (+) False orc3
XM_036955106.1 mRNA downstream 42014 54987738 ~ 54996574 (+) True orc3
TU1874741 other upstream 704571 54240256 ~ 54240751 (+) False G1638780
TU1874742 other upstream 704571 54240256 ~ 54240751 (+) False G1638780
TU1874669 other upstream 770192 54174796 ~ 54175130 (+) True G1638710
TU1873637 other upstream 1514762 53430004 ~ 53430560 (+) True G1637730
TU1873027 other upstream 2026844 52917337 ~ 52918478 (+) True G1637178
TU1875462 other downstream 22633 54968357 ~ 54969610 (+) True LOC110498128
TU1876918 other downstream 981924 55927648 ~ 55930295 (+) True LOC110498153
TU1877589 other downstream 1554433 56500157 ~ 56505897 (+) True G1641405
TU1877600 other downstream 1564205 56509929 ~ 56511097 (+) False G1641407
TU1877601 other downstream 1564205 56509929 ~ 56511097 (+) True G1641407

Expression Profile