RNA id: TCONS_00049755


Basic Information

Item Value
RNA id TCONS_00049755
length 978
lncRNA type lincRNA
GC content 0.51
exon number 4
gene id XLOC_025197
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16874401 ~ 16883304 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcagctcggcgccatattatgggaatcaaaagatgaagattacagtactAATTGCgaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatacaaaaaaattaagaattaagaatgcttctTAATGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCATCTAACGCCGTAGTCCAGCAGCAGCTACTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATGGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCAGGAGTGGTTCATAAGCCTTCCGAAGGTTTTCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGAGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGGGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACCTCTGGACCACCGACATGACCAGCTGCTGGTGACGGCGGACAGCACCCTCGAGAGCTACCACTCTGCCAGGACGCCGTCCACCGTCG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132163

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052631 lncRNA upstream 633061 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA upstream 642119 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00052630 lncRNA upstream 712942 16153224 ~ 16161459 (+) True XLOC_025184
TCONS_00049732 lncRNA upstream 818669 16055009 ~ 16055732 (+) True XLOC_025183
TCONS_00052333 lncRNA upstream 1007999 15865921 ~ 15866402 (+) True XLOC_025180
TCONS_00049777 lncRNA downstream 777546 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00049802 lncRNA downstream 1129853 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 1164355 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 1313351 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 1313427 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049753 mRNA upstream 1492 16841942 ~ 16872909 (+) False XLOC_025196
TCONS_00049754 mRNA upstream 10860 16841975 ~ 16863541 (+) True XLOC_025196
TCONS_00049752 mRNA upstream 100327 16771797 ~ 16774074 (+) True XLOC_025195
TCONS_00049751 mRNA upstream 104083 16762483 ~ 16770318 (+) True XLOC_025194
TCONS_00049750 mRNA upstream 124365 16724614 ~ 16750036 (+) True XLOC_025193
TCONS_00049756 mRNA downstream 45968 16922226 ~ 16973125 (+) True XLOC_025198
TCONS_00049757 mRNA downstream 99837 16976095 ~ 17012340 (+) True XLOC_025199
TCONS_00049759 mRNA downstream 154407 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049758 mRNA downstream 154407 17030665 ~ 17095351 (+) False XLOC_025200
TCONS_00049760 mRNA downstream 154407 17030665 ~ 17107445 (+) False XLOC_025200
TCONS_00049749 other upstream 145386 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 195751 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 285772 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049736 other upstream 501274 16373012 ~ 16373127 (+) True XLOC_025188
TCONS_00049721 other upstream 1100223 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049766 other downstream 518981 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049769 other downstream 595889 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049790 other downstream 1002234 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 1561227 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 1880004 18756262 ~ 18769951 (+) True XLOC_025228

Expression Profile

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