RNA id: TU1877105



Basic Information


Item Value
RNA id TU1877105
length 202
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1640968
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56264759 ~ 56264960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACGTGATCGTGCCCTTTTCACAGGAATCGCAACTTCGAAGTAGGCAACTAGTGAAGACAGACATCGGGGATGCAACAGCGCACGTTGAATTCCAAGGTGCATATTGGAGATGTTAGAAGAACTGCCCACATTTACTTTGTCAGAcaacaagatgagtaacgaacagcaaaagcactagcctatgtcactCTACTATCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1877089 lncRNA upstream 37353 56227153 ~ 56227406 (+) True G1640952
TU1877079 lncRNA upstream 50073 56214210 ~ 56214686 (+) True G1640942
TU1877077 lncRNA upstream 53145 56208706 ~ 56211614 (+) True G1640940
TU1877065 lncRNA upstream 75396 56173493 ~ 56189363 (+) True G1640929
TU1877057 lncRNA upstream 119261 56145276 ~ 56145498 (+) True G1640923
TU1877374 lncRNA downstream 5085 56270045 ~ 56270297 (+) True G1641221
TU1877381 lncRNA downstream 11181 56276141 ~ 56276502 (+) True G1641228
TU1877389 lncRNA downstream 16121 56281081 ~ 56314320 (+) True LOC118941493
TU1877597 lncRNA downstream 244969 56509929 ~ 56511097 (+) False G1641407
TU1877606 lncRNA downstream 259259 56524219 ~ 56526253 (+) True G1641412
XM_036955122.1 mRNA upstream 9975 56250613 ~ 56254784 (+) True LOC118941492
XM_021574766.2 mRNA upstream 332680 55927603 ~ 55932079 (+) False LOC110498153
LOC110498388 mRNA upstream 382057 55852116 ~ 55882702 (+) True LOC110498388
XM_036955113.1 mRNA upstream 479038 55759844 ~ 55785721 (+) False kdm1a
XM_036955123.1 mRNA downstream 179563 56444523 ~ 56584678 (+) False LOC110498155
XM_036955124.1 mRNA downstream 179563 56444523 ~ 56584678 (+) False LOC110498155
XM_036955126.1 mRNA downstream 179563 56444523 ~ 56584678 (+) False LOC110498155
XM_036955125.1 mRNA downstream 179564 56444524 ~ 56584678 (+) True LOC110498155
XR_005037772.1 mRNA downstream 269110 56534070 ~ 56538629 (+) False LOC118941494
TU1876918 other upstream 334464 55927648 ~ 55930295 (+) True LOC110498153
TU1875462 other upstream 1295149 54968357 ~ 54969610 (+) True LOC110498128
TU1874741 other upstream 2024008 54240256 ~ 54240751 (+) False G1638780
TU1874742 other upstream 2024008 54240256 ~ 54240751 (+) False G1638780
TU1874669 other upstream 2089629 54174796 ~ 54175130 (+) True G1638710
TU1877589 other downstream 235197 56500157 ~ 56505897 (+) True G1641405
TU1877600 other downstream 244969 56509929 ~ 56511097 (+) False G1641407
TU1877601 other downstream 244969 56509929 ~ 56511097 (+) True G1641407
TU1877964 other downstream 560992 56825952 ~ 56830309 (+) True G1641713
TU1878241 other downstream 870866 57135826 ~ 57143925 (+) True G1641935

Expression Profile