RNA id: TU1877623


Basic Information

Item Value
RNA id TU1877623
length 517
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G1641422
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56595343 ~ 56611541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtagtaaagtcacaaacagggaggttatggtggtagtaaagtcacaatcagggaggttatggtggtagtaaagtcacatacagggaggccatggtggtagtaaagtcacatacagggaggttatggtggtagtagaaaAGTCACATAGAGGGAGGTTATGGTAGTAGTAACgtcacaaacagggaggttatggtggtagtagaaaagtcacaaacagggaggttatggtggtagtagaaaAGTCTCAAACAGGGAGGTTTTGGTGGTTGTagaaaagtcacatacagggaggttatggtggtagtagaaaAGTCACATAGAGGGAGGTTATGGTAGTAgtaaagtcacaaacagggaggttatggtggtagtagttaagtcacaaacagggaggttatggtggtagtaaagtcacaaacagggaggttatggtggtagtaaagtcacatacagggaggttatggtggtagtagtaaagtcacatacagggaggttatggtggtagtaaagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1877610 lncRNA upstream 52787 56542174 ~ 56542556 (+) True G1641415
TU1877606 lncRNA upstream 69090 56524219 ~ 56526253 (+) True G1641412
TU1877597 lncRNA upstream 84246 56509929 ~ 56511097 (+) False G1641407
TU1877389 lncRNA upstream 281023 56281081 ~ 56314320 (+) True LOC118941493
TU1877381 lncRNA upstream 318841 56276141 ~ 56276502 (+) True G1641228
TU1877639 lncRNA downstream 27649 56639190 ~ 56640100 (+) True G1641438
TU1877644 lncRNA downstream 32523 56644064 ~ 56644916 (+) True G1641443
TU1877646 lncRNA downstream 33471 56645012 ~ 56649250 (+) True G1641444
TU1877791 lncRNA downstream 47406 56658947 ~ 56659322 (+) True G1641561
TU1877793 lncRNA downstream 47965 56659506 ~ 56660295 (+) True G1641563
XM_036955123.1 mRNA upstream 10665 56444523 ~ 56584678 (+) False LOC110498155
XM_036955124.1 mRNA upstream 10665 56444523 ~ 56584678 (+) False LOC110498155
XM_036955126.1 mRNA upstream 10665 56444523 ~ 56584678 (+) False LOC110498155
XM_036955125.1 mRNA upstream 10665 56444524 ~ 56584678 (+) True LOC110498155
XR_005037772.1 mRNA upstream 56714 56534070 ~ 56538629 (+) False LOC118941494
XM_021574772.2 mRNA downstream 239364 56850905 ~ 56862683 (+) False LOC110498162
XR_002469781.2 mRNA downstream 446993 57058534 ~ 57062178 (+) True LOC110498163
XM_021574774.2 mRNA downstream 463986 57075527 ~ 57080042 (+) True LOC110498164
XR_005037776.1 mRNA downstream 474752 57086293 ~ 57088604 (+) True LOC110511273
XR_005037779.1 mRNA downstream 477528 57089069 ~ 57096631 (+) False LOC110517953
TU1877600 other upstream 84246 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 84246 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 89446 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 665048 55927648 ~ 55930295 (+) True LOC110498153
TU1875462 other upstream 1625733 54968357 ~ 54969610 (+) True LOC110498128
TU1877964 other downstream 214411 56825952 ~ 56830309 (+) True G1641713
TU1878241 other downstream 524285 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 663512 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 1044808 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1552936 58164477 ~ 58176485 (+) True G1642993

Expression Profile