RNA id: TU1877625


Basic Information

Item Value
RNA id TU1877625
length 390
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1641424
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56605436 ~ 56608756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagtaatgtcacatacagggaggttatggaggtagtaaagtcacatacagggaggttatggtagtagaaaagtcacatacagggaggttatggtggtagtagtaaagtcacaaagggaggttatggtggtagtagtaaagtcacatacagggaggttatggtggtagtataaAAGTCAcaaagggaggttatggtggtagtagtaaagtcacatacagggaggttttGGTAGCAGTAAAGTCCCATACAGGGAGGATATGGTGGTAGTATAAAAGTCACAAAGGGAGgttatggtggttgtagtaaagtcacatacagggaggttatggtggtggtagtaaagtcacatacagggaggttatcgtggtggtagtaaagtcacatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1877624 lncRNA upstream 4993 56594418 ~ 56600443 (+) True G1641423
TU1877610 lncRNA upstream 62880 56542174 ~ 56542556 (+) True G1641415
TU1877606 lncRNA upstream 79183 56524219 ~ 56526253 (+) True G1641412
TU1877597 lncRNA upstream 94339 56509929 ~ 56511097 (+) False G1641407
TU1877389 lncRNA upstream 291116 56281081 ~ 56314320 (+) True LOC118941493
TU1877639 lncRNA downstream 30434 56639190 ~ 56640100 (+) True G1641438
TU1877644 lncRNA downstream 35308 56644064 ~ 56644916 (+) True G1641443
TU1877646 lncRNA downstream 36256 56645012 ~ 56649250 (+) True G1641444
TU1877791 lncRNA downstream 50191 56658947 ~ 56659322 (+) True G1641561
TU1877793 lncRNA downstream 50750 56659506 ~ 56660295 (+) True G1641563
XM_036955123.1 mRNA upstream 20758 56444523 ~ 56584678 (+) False LOC110498155
XM_036955124.1 mRNA upstream 20758 56444523 ~ 56584678 (+) False LOC110498155
XM_036955126.1 mRNA upstream 20758 56444523 ~ 56584678 (+) False LOC110498155
XM_036955125.1 mRNA upstream 20758 56444524 ~ 56584678 (+) True LOC110498155
XR_005037772.1 mRNA upstream 66807 56534070 ~ 56538629 (+) False LOC118941494
XM_021574772.2 mRNA downstream 242149 56850905 ~ 56862683 (+) False LOC110498162
XR_002469781.2 mRNA downstream 449778 57058534 ~ 57062178 (+) True LOC110498163
XM_021574774.2 mRNA downstream 466771 57075527 ~ 57080042 (+) True LOC110498164
XR_005037776.1 mRNA downstream 477537 57086293 ~ 57088604 (+) True LOC110511273
XR_005037779.1 mRNA downstream 480313 57089069 ~ 57096631 (+) False LOC110517953
TU1877600 other upstream 94339 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 94339 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 99539 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 675141 55927648 ~ 55930295 (+) True LOC110498153
TU1875462 other upstream 1635826 54968357 ~ 54969610 (+) True LOC110498128
TU1877964 other downstream 217196 56825952 ~ 56830309 (+) True G1641713
TU1878241 other downstream 527070 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 666297 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 1047593 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1555721 58164477 ~ 58176485 (+) True G1642993

Expression Profile