RNA id: TU1878009


Basic Information

Item Value
RNA id TU1878009
length 391
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1641749
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56898877 ~ 56906795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgcatcaggcccagtcctttaataaaccatgtagaacaagctgcaccaggccctttaataaaccatgtagaacaagctgcatcaggccctttaataaaccgtgtagaacaagctgcatcaggccctttaataaaccatgtagaacaagctgcatcaggcccttcaataaaccatgtagaacaagctgcatcaggccctttattaaaccatgtagaacaagctgcatcaggccctttaataaaccatgtagaacaagctgcatcaggccctttaataaaccatgtagaacaagctgcatcaggccctttaataaaccatgtagaacaagctgcatcaggcccagtcctttaataaaccatgtagaacaagctgcaccaggccctttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1878005 lncRNA upstream 1689 56895898 ~ 56897188 (+) True G1641747
TU1877945 lncRNA upstream 36277 56862100 ~ 56862600 (+) False LOC110498162
TU1877946 lncRNA upstream 36461 56862100 ~ 56862416 (+) True LOC110498162
TU1877985 lncRNA upstream 38231 56860205 ~ 56860646 (+) True G1641732
TU1877970 lncRNA upstream 63259 56834989 ~ 56835618 (+) True G1641718
TU1878016 lncRNA downstream 14187 56920982 ~ 56921219 (+) True G1641755
TU1878017 lncRNA downstream 16025 56922820 ~ 56923311 (+) True G1641756
TU1878031 lncRNA downstream 50418 56957213 ~ 56957483 (+) True G1641768
TU1878037 lncRNA downstream 60238 56967033 ~ 56967362 (+) True G1641774
TU1878146 lncRNA downstream 66550 56973345 ~ 56973566 (+) True G1641864
XM_021574772.2 mRNA upstream 36194 56850905 ~ 56862683 (+) False LOC110498162
XR_005037772.1 mRNA upstream 360248 56534070 ~ 56538629 (+) False LOC118941494
XR_002469781.2 mRNA downstream 151739 57058534 ~ 57062178 (+) True LOC110498163
XM_021574774.2 mRNA downstream 168732 57075527 ~ 57080042 (+) True LOC110498164
XR_005037776.1 mRNA downstream 179498 57086293 ~ 57088604 (+) True LOC110511273
XR_005037779.1 mRNA downstream 182274 57089069 ~ 57096631 (+) False LOC110517953
XR_005037778.1 mRNA downstream 182275 57089070 ~ 57096631 (+) False LOC110517953
TU1877964 other upstream 68568 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 387780 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 387780 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 392980 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 968582 55927648 ~ 55930295 (+) True LOC110498153
TU1878241 other downstream 229031 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 368258 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 749554 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1257682 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1386541 58293336 ~ 58298235 (+) False LOC110498189

Expression Profile