RNA id: TU1878458


Basic Information

Item Value
RNA id TU1878458
length 202
lncRNA type intronic
GC content 0.33
exon number 2
gene id G1642100
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57272452 ~ 57272747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctacagactatcagtaacattttaACTGTCTATCTACTAACCTTAACTCTTATCTTAACCGTAACGTTTCAACTGTCTATCTACTAACCTTAACTCTTATCTTAACCGTAACATTTCAACTGTCTATCTACTAACCTTAACTCTTATCTTAACCGTAACGTTTCAACTGTCTATCTACTAACCTTAACTCTTATCTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1878367 lncRNA upstream 75501 57196137 ~ 57196951 (+) True LOC110498389
TU1878233 lncRNA upstream 105580 57069851 ~ 57166872 (+) False LOC118941498
TU1878409 lncRNA downstream 4580 57277327 ~ 57278371 (+) True G1642060
TU1878459 lncRNA downstream 6513 57279260 ~ 57279537 (+) True G1642101
TU1878434 lncRNA downstream 10377 57283124 ~ 57315063 (+) False G1642080
TU1878433 lncRNA downstream 41511 57314258 ~ 57315063 (+) True G1642080
TU1878577 lncRNA downstream 165010 57437757 ~ 57440684 (+) True G1642195
XM_036955140.1 mRNA upstream 75497 57176839 ~ 57196955 (+) False LOC110498389
XR_005037803.1 mRNA upstream 105395 57163773 ~ 57167057 (+) False LOC118941498
XM_036955133.1 mRNA upstream 128334 57141510 ~ 57144118 (+) False LOC118936466
XM_036955134.1 mRNA upstream 128334 57141515 ~ 57144118 (+) False LOC118936466
XM_036955135.1 mRNA upstream 128334 57141558 ~ 57144118 (+) True LOC118936466
XM_036955145.1 mRNA downstream 128010 57400757 ~ 57483898 (+) False LOC110498392
XM_036955146.1 mRNA downstream 128010 57400757 ~ 57483899 (+) False LOC110498392
XR_005037804.1 mRNA downstream 128010 57400757 ~ 57502753 (+) True LOC110498392
XM_036955157.1 mRNA downstream 282203 57554950 ~ 57563838 (+) False nipal3
XM_036955158.1 mRNA downstream 282203 57554950 ~ 57563838 (+) True nipal3
TU1878241 other upstream 128527 57135826 ~ 57143925 (+) True G1641935
TU1877964 other upstream 442143 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 761355 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 761355 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 766555 56500157 ~ 56505897 (+) True G1641405
TU1878413 other downstream 2306 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 383602 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 891730 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1020589 58293336 ~ 58298235 (+) False LOC110498189
TU1880791 other downstream 1781776 59054523 ~ 59057223 (+) True G1644123

Expression Profile