RNA id: TU1878413


Basic Information

Item Value
RNA id TU1878413
length 1725
RNA type TUCP
GC content 0.44
exon number 1
gene id G1642062
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57275053 ~ 57276777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCCTATCCTTACTACGTCACTTACCTAGGACACAAAAAAGGCTGGAATGGACTCTCTTGAAAGCAACTCATTCAAAGACAACAAAGAAATGCTTGCTCTCTTTCCTGGTCATTTCTTATGAGAGAATATTCTGAACCACTTTGATGTGTTGTGATCTGATGACTAGAGACTCCCATAAACTGTAATTGTATAAACAGACAGTGCACTTAAGGAAGTCGCCATAAAGAAAGAAGGGATGAAAGAGATCATATTACAGGAAGGAATGCCACCCTCACAACCCGACAGAAGAGAGTGAAAACGCCTCCCTCTGCTTTTGACCTCTAATACCTGTATGCTTTACATCTGTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGGTATTAAAGGGATGTTTTTATCACACCTTACAGCACAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGGTATTAAAGGGATGTTTTTATCACACCTTACGGCCCAGGGTATTAAAGGGATGTTTTTACCACACCGTATCGCCCAGGGTATTAAAGGGATGTTTTTACCACACCTTACGGCCCAGGATATTAAAGGGATATTTTTACCACACGTTGCTTCCCAGGGGAAATTATAAGAGCAACAGCTGTAGCCACATAACTGCTGGAATACCTGTGATGCAGACTGCCTGCGCGTGTGTCTGAGATTATAACCATACCATTGGATTACCTGGCAATGACATACATACAAcactggtgtctggaggagtgaGATCGTGTGCTGTGGGAGCCCTAGAAAAGAGGATGAATAGTCGGCATTGTCCACTGCCTTCCTGGAAACTAAGGAGACTTAAGAGATTCATGCCATGTCAGTCACGGTACGTCGGGACTCTGAGCCAGATGCAATGAATACCTGCTCAGTGACCGGTGGCGATTATGTCTGGGGCTGGAACGACCTGGAACTGAAAGCGCATTTGTGGCTGCCAGCCTGTCTCCTGGGGCTCCAGGGTTCTCTGGCTGCCGAACTGAAATGGAACCCCAGTGTCTAAGGTGGTTTTGGGCCAGACTCCAGCTCCAGCCTGGCTGGAGCCTGGGTGGAGCCTGGGTGATTTGGTTTTCTCCGTCTCCAGAGGAGTCTGTCTTCCTACAGTCGACAGGGGAAAGGAAGAGACTGTCACCGCAGTGAAATACACAAAGCTGGGTTGTATTCAGTAGGCAccaaatggactgaaacaggaaaagactacctgaacttgtccaataagaaatgcaaaTTTTTCATTTTAgtttgccctaatgaacatgacccaattCTAGTGCCTTTTTCCATACAGTAGATCTCGGTTCTGGGTCTATACTAAAGGCATGGACAGTTGGACACTTCCATATTGTAAAGAAAAGAGAAGGTTGTAGAGAATTGTAAATAGATATTATTACACCCATGAATTGTGATGGAAGGATTCCATATCGCTAACCATAAGCTAGTATTGAGACATTAGTTGTTTTCCTAGTCTCTTGAGCACCATAACTCTACAGTGTAATTACATTTTACTAGTGCATACTCACATCTGACCACTCCCATTCATATCAATTCATATTTGTCATGTTCTGAATCTGCAGTAAAGGCATATTAATACATTGCATTGCGTGTTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1878458 lncRNA upstream 2306 57272452 ~ 57272747 (+) True G1642100
TU1878367 lncRNA upstream 78102 57196137 ~ 57196951 (+) True LOC110498389
TU1878233 lncRNA upstream 108181 57069851 ~ 57166872 (+) False LOC118941498
TU1878234 lncRNA upstream 108181 57069851 ~ 57166872 (+) False LOC118941498
TU1878232 lncRNA upstream 108181 57162750 ~ 57166872 (+) True LOC118941498
TU1878409 lncRNA downstream 550 57277327 ~ 57278371 (+) True G1642060
TU1878459 lncRNA downstream 2483 57279260 ~ 57279537 (+) True G1642101
TU1878434 lncRNA downstream 6347 57283124 ~ 57315063 (+) False G1642080
TU1878433 lncRNA downstream 37481 57314258 ~ 57315063 (+) True G1642080
TU1878577 lncRNA downstream 160980 57437757 ~ 57440684 (+) True G1642195
XM_036955141.1 mRNA upstream 451 57215239 ~ 57274602 (+) False LOC110498167
XM_036955143.1 mRNA upstream 451 57215590 ~ 57274602 (+) True LOC110498167
XM_036955142.1 mRNA upstream 463 57215239 ~ 57274590 (+) False LOC110498167
XM_036955140.1 mRNA upstream 78098 57176839 ~ 57196955 (+) False LOC110498389
XR_005037803.1 mRNA upstream 107996 57163773 ~ 57167057 (+) False LOC118941498
XM_036955145.1 mRNA downstream 123980 57400757 ~ 57483898 (+) False LOC110498392
XM_036955146.1 mRNA downstream 123980 57400757 ~ 57483899 (+) False LOC110498392
XR_005037804.1 mRNA downstream 123980 57400757 ~ 57502753 (+) True LOC110498392
XM_036955157.1 mRNA downstream 278173 57554950 ~ 57563838 (+) False nipal3
XM_036955158.1 mRNA downstream 278173 57554950 ~ 57563838 (+) True nipal3
TU1878241 other upstream 131128 57135826 ~ 57143925 (+) True G1641935
TU1877964 other upstream 444744 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 763956 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 763956 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 769156 56500157 ~ 56505897 (+) True G1641405
TU1879008 other downstream 379572 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 887700 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1016559 58293336 ~ 58298235 (+) False LOC110498189
TU1880791 other downstream 1777746 59054523 ~ 59057223 (+) True G1644123
TU1880963 other downstream 1919907 59196684 ~ 59197013 (+) True G1644280

Expression Profile