RNA id: TCONS_00004716


Basic Information

Item Value
RNA id TCONS_00004716
length 2934
RNA type mRNA
GC content 0.51
exon number 24
gene id XLOC_002526
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3364650 ~ 3394290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGAGGGGCCATGTGCAAGACCCTAACGACAGGAGGCTACGACCTATCTACGATTACCTGGACAATGGAAATAACAAGATGGCAATCCAGCAGGCCGACAAACTGCTCAAGAAGCACAAAGATCTCCACTGCGCAAAGGTCCTGAAGGCAATCGGTCTGCAGCGAACAGGAAAACAGGATGAAGCCTTTACGTTAGCACAGGAAGTGGCGGTTCTCGAACCCACTGATGACAACTCTCTACAGGCACTGACCATCCTCTACAGAGAGATGCACCGACCCGAGTTAGTGACCAAGCTTTATGAAGCTGCAGTTCGGAAGGTTCCAGCAAGCGAAGAGTACCACTCTCACCTCTTCATGGCCTATGCTCGGGTTGGAGAATACAAGAAGATGCAACAGGCTGGAATGGCACTCTATAAAATTGTCCCCAAAAACCCCTATTACTTCTGGTCAGTCATGAGCTTGGTGATGCAGGCCATCTCAGCGCAAGACGAGAAGCTCTCTCAGACCATGTTCCTGCCATTAGCAGAGCGTATGGTGGAGAAAATGGTCAAGGAGGAAAAAATCGAGGCAGAAGCTGAGGTTCAGCTGTACTTCATGATCTTGGAGCGCTTGGGAAAATATGTGGAGGCGCTGGAGGTGGTTCAGGGGCCACTCGGAGAGAAGTTGACCAGTGAACTACAGAGCCGTGAGAACAAATGTATGAAGTTGTACCGGCGTCTGGAGCGCTGGCCCGAGTGCAACGCTTTGTCCAGCAAACTGCTCCTGAAAAACCCTGATGACTGGCAGTTCTACTTGTTGTATTTTGACTCGTTGTTCCACCTCATCGATCAAAGCTGGACGCCGCCACAGGAAGGAGCTCACTGTGCAGAAGGTGAAGTTCATGCCTCTGTAGCTCAGTCCATCAGCTTCATGGAGGAGCGTCTGGCCACAGAAGACGCAAAGGAGTCGAAACATCTGAGAGGACCATACCTGGCCCATCTGGAGCTCATCAGACGTCTCCGAGAGCGCAGCTGTCCTGAAGCACAGCAGCTCGGGGATCCTCTTGAGCTTATGTTCCAGTTCTTCGTGAAGTTTGGAGACAAGCCATGTTGCATCACGGACCTGAAGATCTTTCTGGACCTTCTCATCCCTGACCAACATGTGCAGTTCATCAACAGGCTAATGGAGGCTGTGCCACTGGGTGCTCCAGGAGAGGATGGTTTCGCCTTCCCAGAAGACACTCGGGCTCTGCAGAGACACATGTGTGTGACGCAGCTCAGCCGCGGTCTGGGTCTACAGCATTCCCTCAACACTGACGGCAAACTGGGGGTCATTAAAGAGCTGAAGGCACACTACCGGCACGGCTTACAGTTCGggAAGTCCTGTTTAAAAACGGAGCTGCAGTTCTCGGATATGTACTGTCTCATGGCAGCGCATGTCTATATAGACCTGTGGATTGAGACGGATGATCAGAACATGTTGTGGCAGTGTCTGGGGATGTTAGAAGAAGGTCTGTCCCACAGTTCCTCCAACGCTCAATTCAAACTGCTGCTTTTGCTTCTGTACTGCCGTCTTGGGGCTTTTGAGCCGGTGGTAGATCTTTACTCCAGTTTGGATGCTAAACACGTCCAGCATGACACCATTGGGTATTTATTGACCCGCTATGCAGAGTCTTTGGGCCAGTTTGCTGCTGCTTCCCAATCTTGTAACTTCTCCCTCAGGTTTTTTCACTCGAACCAGAAAGATACCTCAGAATACATTATTCAAGCATATAAGTACGGTGCTTTTGAGAAAATCCCGGAGTTCATCGCCTTCAGGAACCGACTCAATCACTCGCTGCACTTTGCTCAAGTGCGCACGGAGCGGATGCTGCTGGACCTCTTCCTAGAAGCCGACATATCTTCAACTCTAGACGAGAGCGTAAAATCGATGTCTTTGTGTCCGGAGGAAGATGATATCCCATGGGACAATTTAAGGGACAACCGTGACCTGACTGTCTTTGTCAGCTGGGACCCTAAAGACAAGCAGCTGAAGGAGGAGCACAAGCTGCGCTCTCTAGAAGACGAGACCCTGTGGTTGAAGCTGCGGTCGCTCACTCTGCGTCTGATTGGCTGCGTTTCTGGACTCACTCACTCGTCGACGGCACGCAACTCTGAAAAGACAACTGAAAACGGAGTCACGGCCAAACCATCTTCTCTACAATCTCTGCTCTCCCAGCTAGAAAACACACTAAACCAGGCCTCGCAGTTCACGGAAAAACAGCTTCAGTTGCAGCAGCAGTACCCGTTTTTGGGTCCCGTGTCGTCTCGTTTGTCTCAGGCTGTGTCCAGTGGCTGCTGTCAATGTCAGCTGTCGTCTCTTCAGCTTCCTCTGCACCTGCAAGAGCTGGAAACTATTGACCTAGATGAATCAACAGAACTTCAAACACAAATATCAAATCTTTTCAAGTCTTTAGCAGTACAACTTCAAGAAATGTTGGAAAAATGTAAAGGAGATCTATTAGAGGTGAAAGACGGTCAAACCAAGACGCAGCACTTTTTACTGGAGCATCTAGTCTACTTTGTTGAAACTGTTTGTATCGTCCTATGGATATCTAGTTACTGTGCAAGTGTCCTCCGGCCCTTAAAGTCCAGTttacagaagaagaagaaaaagaaaaaagaagctaGCATCGTGACGCCGGCGGTGATTTTGGCCTTTCAGGAGTTTAGCAGCAGCTTGCAGAGCCTCCTCAACCAGGCCCTGGAGCACATCAAGAGCCAGGAGATCAGCCTGACCGCACTGAAGCTGGAGGCCCTCAGTCTGGAGGGACAAACCCAGaccgagGCGGAAGGGACCTTCACAAAGACCGCGATGGAGAAGGTGCAGAGCAGCTACCTGCGTTCGCTGCAAGAGATCGGGGAACTGTTGAAGAAGAGAGCGGACTCGTTGAAATCCCTCAAAATCTGA

Function

GO:

id name namespace
GO:0017196 N-terminal peptidyl-methionine acetylation biological_process
GO:0031416 NatB complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004596 peptide alpha-N-acetyltransferase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041111-190 Predicted to contribute to peptide alpha-N-acetyltransferase activity. Predicted to be involved in N-terminal peptidyl-methionine acetylation. Predicted to be part of NatB complex. Predicted to be active in cytoplasm. Orthologous to human NAA25 (N-alpha-acetyltransferase 25, NatB auxiliary subunit).

Ensembl:

ensembl_id ENSDART00000158315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005978 lncRNA downstream 39472 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00005977 lncRNA downstream 466799 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00004699 lncRNA downstream 594066 2766874 ~ 2772037 (-) False XLOC_002516
TCONS_00005976 lncRNA downstream 1412644 1948097 ~ 1953459 (-) True XLOC_002510
TCONS_00005975 lncRNA downstream 1649553 1712579 ~ 1716550 (-) True XLOC_002505
TCONS_00004718 lncRNA upstream 18293 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00004721 lncRNA upstream 27925 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00005979 lncRNA upstream 559834 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00005744 lncRNA upstream 638222 4032478 ~ 4046317 (-) True XLOC_002532
TCONS_00005980 lncRNA upstream 643970 4038226 ~ 4040505 (-) True XLOC_002533
TCONS_00004714 mRNA downstream 33741 3322663 ~ 3332362 (-) True XLOC_002525
TCONS_00004713 mRNA downstream 70906 3268581 ~ 3295197 (-) True XLOC_002524
TCONS_00004712 mRNA downstream 108030 3187289 ~ 3258073 (-) True XLOC_002523
TCONS_00004711 mRNA downstream 227244 3133098 ~ 3138859 (-) True XLOC_002522
TCONS_00004709 mRNA downstream 332833 3031636 ~ 3033270 (-) True XLOC_002521
TCONS_00004717 mRNA upstream 3615 3397871 ~ 3416258 (-) False XLOC_002527
TCONS_00004719 mRNA upstream 25576 3419832 ~ 3427630 (-) False XLOC_002528
TCONS_00004720 mRNA upstream 26232 3420488 ~ 3427589 (-) False XLOC_002528
TCONS_00004725 mRNA upstream 885265 4279521 ~ 4316015 (-) False XLOC_002535
TCONS_00004724 mRNA upstream 885265 4279521 ~ 4316015 (-) True XLOC_002535
TCONS_00004703 other downstream 490368 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 490368 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 3026076 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 3289912 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 3291713 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004722 other upstream 112284 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 374395 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 1624302 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 1625930 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 1626021 5020277 ~ 5024285 (-) True XLOC_002543

Expression Profile

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