RNA id: TCONS_00049797


Basic Information

Item Value
RNA id TCONS_00049797
length 751
RNA type mRNA
GC content 0.53
exon number 2
gene id XLOC_025213
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17933132 ~ 17946949 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCTAGTCCTCGGAACGGACAGGCGGGGGTTTCTGCAGCGGAGAAACGTGGAATTTGGCCGAACGGCGCTTTTGAACCTTCAGCTTCGGGAACAGTGACAGCTTTTCTACATCTGCCAGCGTTATAATCCACAGTGTAGCAATGGAAGCTGAACAGAATCAGGAAGTTCAAGAGGCAGTTCCTGAGACGCAGGAAGTGGCGGCTCAGCAAGAGGAGAAATCAGAGCCCAAGTCCGAAGAGGCGCCTCAGGCTCCTTCAGAAGCAGCAGCAGATCCTCCAGCAGCGGCCACTGAACCGGAGAAGCCCCAAGAGAGAGAGCCTTCTGCCGAGGAACAGCAGAAAGCAACAGAATCTGCAGCACCTCCTGCCAAACCCTCTGAACCCGAGGCGAAATCTCCAGAGGATTCCTCTGAAAAAACCCCTGAGCAGCAGCAGAAGTCGTCCGAGGAGCCATCGCTTCAAGTCAATTCTGAGCCCGAGAAGCAGGAGGAGGAAGCTGTGAAAGAGGCTGAGTCTAAGAAAGAGGAGCCTGTCAAAGAGGCGGATTCCAAACCTGCTGCTGTGAATGAAGTCAAGCCAGAGGAGTCTGAGAAAAGTGAGACGACAAAAGCAGAAGGAGAAAAGGTACAAGTGCCCGATTCTGATGGAGTTCAAGCTGAGCCTCCAAAAGAGGCCGAACCTGAGGAGAAGAAACCAGAGCTGCCACTCTTTTATGGCTGGTTCCTGCTTAAAGAGGAAGAGGAGCGAATT

Function

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0009214 cyclic nucleotide catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030521-29 Enables 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity. Acts upstream of or within axon regeneration. Located in cytosol. Is expressed in several structures, including axis; cardiovascular system; central nervous system; hindbrain neural plate; and neural tube. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 20; multiple sclerosis; and schizophrenia. Orthologous to human CNP (2',3'-cyclic nucleotide 3' phosphodiesterase).

Ensembl:

ensembl_id ENSDART00000164853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049777 lncRNA upstream 277757 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00052633 lncRNA upstream 1049905 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 1055513 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00049755 lncRNA upstream 1056951 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00049734 lncRNA upstream 1700927 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049802 lncRNA downstream 65618 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 100120 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 249116 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 249192 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049812 lncRNA downstream 458824 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00049791 mRNA upstream 4976 17910569 ~ 17928233 (+) True XLOC_025212
TCONS_00049786 mRNA upstream 22834 17878124 ~ 17910375 (+) False XLOC_025211
TCONS_00049801 mRNA downstream 11297 17951790 ~ 18009316 (+) False XLOC_025214
TCONS_00049803 mRNA downstream 106283 18046776 ~ 18051045 (+) False XLOC_025215
TCONS_00049804 mRNA downstream 110174 18050667 ~ 18061783 (+) True XLOC_025215
TCONS_00049805 mRNA downstream 122378 18062871 ~ 18080924 (+) True XLOC_025216
TCONS_00049806 mRNA downstream 157207 18097700 ~ 18104658 (+) True XLOC_025217
TCONS_00049790 other upstream 35357 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 410282 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 471324 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1204194 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1254559 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049819 other downstream 496992 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 815769 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 927342 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 952157 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 976968 18917461 ~ 18917583 (+) True XLOC_025235

Expression Profile

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