RNA id: TCONS_00004719


Basic Information

Item Value
RNA id TCONS_00004719
length 1590
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_002528
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3419832 ~ 3427630 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCCATCCGGCGGATCGTCTAAATCTTGACGTGGCATCACCAGTAGCGCAGCTAGCGCTTGTCAGTCTCCGCCTTTATCGGCCCAGCGCGGTGTAAACTCTCTTTTATGGGTTTAACTCTCCATTAATTCACCGCACCAAACATGTTTACGTTCTCGGAACTCATCGTTCTCCTTTGCGCGTTGTCCTACACGGCGAGCGGCTATTTTGTGAGCATCGACGCGCACGCGGAGGAGTGTTTCTATGAGCGCGTGAACTCGGGCACGAAGATGAGCCTGATGTTTGAGGTCGCCGAGGGAGGATTTCTGGACATCGACGTCAAGATAACGGGTCCAGACGGGAAGCAGATCTATAAAGGAGACCGTGAGTCCAGTGGGAAGTATTCTGTAGCCGCTCACATGGACGGAACCTACAAGTTCTGCTTCAGCAATGAGATGTCCACCATGACCCCCAAGATTGTGATGTTCACCATTGACATCGGCGAGGCGCCCAAAGGACAAGACATGGAGACAGAGGCTCATCAGAATAAGCTGGAGGAGATGATTAACGAGCTGGCGGTTGCCATGACAGCAGTCAAACATGAGCAGGAATACATGGAGGTCCGAGAGAGGATACACCGCGCAATCAATGACAACACAAACAGCAGGGTGGTGCTTTGGTCCTTCTTTGAGGCTCTAGTGCTGGTGGCCATGACCCTCGGACAGATTTACTACCTGAAGAGATTCTTTGAAGTGCGGAGAGTCGTATAAAAATCCTGTGTTCTCCAACAAACACATCGCGTCTGTGATTTACCAGTTTCACGAATTGGACGTCCAATTCAGCAGATCGGAAGAACTTGGTTGTTTCTCTAGTCCaccagtctttgtttttattcgcCCCAGTTGTAGACCTTCGTCATCGTTTTGTTTGCGAATTGGTTGCGAATGTTGTTCATTAATTGATTTTTGGTTCGTTTTAGCCcggtttttttgtacattttattttgaacaggcgtcttttattttatgtttttggctTGGTGTTTCTTCTCCAGTACTGTTACAATTGCACATTACTATGAGAATGAAGTAGAGGTGGCGTTGCTCCATTGAGAATGGGGTTTAGGATTGTATGGAATGGCATGATGTAATTAACCATAACACGAACAGAGCGAATGGGGAAGTCTGACCGCAAGCACATTTCATGTCATATTCACTGCTTATTATCACATTTAATTATGCCGACAACCTCCATGGCACATATTTAAACCTGATACTGGTAAAGCAGGAAAACTAAAATGACTGCTCGGTTCAATTTGCAGATTTATTCTggtgtgtttttaatgtttagGCAGGGTAGGCCCGATTTCTTTTTCCTTCTCTCTATCTTCAGTTTCTTCACACGGGAAGTACTTTATGTAGTTTTGTACAATTTTTGTTGTCTGAACCAACTCTTACATGAATGATGAATACTAAAGTTATTTGGCTAAGACTACTgggaaaatgaaaataataataaaatgaaaaaaaaaaaaagagtaaacatCTGAAGTTCAATGAGTATGTCAAGTATGAGTTTGATTTAATAAACATGGAACATGTTCTTAAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-269 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

Ensembl:

ensembl_id ENSDART00000037183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004718 lncRNA downstream 3679 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00005978 lncRNA downstream 93201 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00005977 lncRNA downstream 520528 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00004699 lncRNA downstream 647795 2766874 ~ 2772037 (-) False XLOC_002516
TCONS_00005976 lncRNA downstream 1466373 1948097 ~ 1953459 (-) True XLOC_002510
TCONS_00005979 lncRNA upstream 526460 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00005744 lncRNA upstream 604848 4032478 ~ 4046317 (-) True XLOC_002532
TCONS_00005980 lncRNA upstream 610596 4038226 ~ 4040505 (-) True XLOC_002533
TCONS_00005981 lncRNA upstream 668241 4095871 ~ 4099183 (-) True XLOC_002534
TCONS_00005982 lncRNA upstream 1080759 4508389 ~ 4577852 (-) True XLOC_002537
TCONS_00004717 mRNA downstream 3574 3397871 ~ 3416258 (-) False XLOC_002527
TCONS_00004715 mRNA downstream 25542 3364650 ~ 3394290 (-) False XLOC_002526
TCONS_00004716 mRNA downstream 25576 3366103 ~ 3394256 (-) True XLOC_002526
TCONS_00004714 mRNA downstream 87470 3322663 ~ 3332362 (-) True XLOC_002525
TCONS_00004713 mRNA downstream 124635 3268581 ~ 3295197 (-) True XLOC_002524
TCONS_00004725 mRNA upstream 851891 4279521 ~ 4316015 (-) False XLOC_002535
TCONS_00004724 mRNA upstream 851891 4279521 ~ 4316015 (-) True XLOC_002535
TCONS_00004726 mRNA upstream 939800 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004727 mRNA upstream 1513137 4940767 ~ 4961923 (-) False XLOC_002541
TCONS_00004728 mRNA upstream 1525722 4953352 ~ 4961929 (-) True XLOC_002541
TCONS_00004703 other downstream 544097 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 544097 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 3079805 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 3343641 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 3345442 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004722 other upstream 78910 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 341021 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 1590928 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 1592556 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 1592647 5020277 ~ 5024285 (-) True XLOC_002543

Expression Profile

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