RNA id: TCONS_00049804


Basic Information

Item Value
RNA id TCONS_00049804
length 2164
RNA type mRNA
GC content 0.36
exon number 7
gene id XLOC_025215
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18040613 ~ 18061783 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATTGTGGGATGTGGAGCTCTATACATTATTGCCGTTCTTATAAACAGAATTTACACGACTAAACGGACCGAATGAAGAACAATTATACAATTACatgtatttaaattgtgtttCTGCAGCATTTGTCGCTTTCATCCATTTTGAATTCAATAAGCATCATCTTCTCATGTGACCTGATGTGAGCTGCCATCATTTTTTACACCTACAGCAGGCTACATGACTGCATGAATCTCTCTGGACGTTTTCACTGTCCTGGAACTGCTTTACACCGCCGAACTTCTTTTAAAGGAACTTGTCGTTGGATGTGCAAAATGCTGAACGCTGCAGCAGCCGACAGGAACAAGGACCCGATCCTTTCTGTGCTGAAAAGCAGGGTGGCATCCAACAGACGTCTGTTCGCTTTGGAAATATCCTCTGGCACAGGACAACATGTCGTTCACTTCGCCAAAGCATTCCCGAACATTACATGGCAACCGTCTGAAGTTGAGACTCAGTCGTTATCGAGTATTGAGGCATATAGACAGTATCACCGGCTGCAGAATGTACAGCCACCCATATATCTTGATGTGTCTCAGAGCTGGCAGACCTGGGGAGGATTTCCAGCAGAGTCATGTGACCTGATCATAAACATCAACATGATGCACATCTCTCCTCTGGCCTGCACAACGggttTGTTTCATGGTGTTGGACAGATACTGAAACCACAAGGATTACTTCTGACTTATGggCCTTATGCCTTCAATGGATCGATCGTTCCTCAGAGCAATTTTGACTTTGACCAAAGTTTGAGATACAGaaatcCAGAGTGGGGTCTAAGAGATGCATCATTTCTGACAACGTTAGGACAAGAAAATGGACTGCGATTGGAGGAAATTGTTGATATGCCCGCCAACAACAAGTGCTTACTCTTTCGCAAGGACAGTGTGGTTTGATATCATATTAATCTGTACAGTAACGCACAATATTTACATTTGCGTGGACTCCTGCCAGTGTTTTAACGGTTTAAAGGCAACAATACAGAGGCTTTGCTGAAGTTGGTAAGATGTGTTCTTGCATTAATGTggcttaaaaaatgtttacagcataGGAAAGTAATATTTTAGACGTTTAAAGGGATGTGCACTTTTGTGAAATTAATGACAACACACTTTATATTAAAATTACTACTTTGATTGCAGGGAAAGTAAACTTAAAGTGCCTGTAGTTAATCTGAGGATATAATGTTGATGAAGCTGGACTTTGATTCTAATAATTGTTCATTTCTTAGTACATCCCATTGGTGTattgttttataatgttatttactCCTATAGTTTTAAATCTTAAATACAAGGTTTCTGCTAAACATGGCTTTTAACATGGCCTAACATCTTAGCATAGCATTACCATCCTTAACCTGTTGTTGACCAAACACCAATTTTCGTAACCAAGTGAAttatgtgtgattgtgtgttttgATAAATTTAAATAAGATATAAACTTAAAgacttttgttgcttgttcaaactacttattttaaatgagttgaaacTCAATTGTTAAGTTTTTTagacttaattgtttcatgttcattccacttaaatttgtaaagattatgaagttaacctaattgtttcgTATTGGGGCAACATGGAGttgtgtggaacctagcatttcttacagtgtaaactgaaatatatatgtatatttaatgcATTACAATCTTTGGATTTAAAGTGAATTCTACAGatgataaaacaaatacaattatgttcacaaatcaatcattttaaattGCAAAATAACCATTTTTTCATAGCTATGGTTTACTAGTTACTTTACTTGTTTTACTTTATTGGGGGCACACACTAATAATGAATTCCCACAACTTAATAgattgttctctaattttgatgcAATAAATCATTGCCAACTTGAACTaattaattctttttctttttaaattaaatcataaaaaaggaatTGTATATTGCAACAAGGGCATTTTGTAATTTTGCAGTGTGCATAGTTAAAAAGAGGGAACAAATTACTAAAACATGCTGGCTTACCAGGAAGTGACTGTTTAATTTGTGGTTacaaatgtatgtgtttttaaggggtagttcacccaaaactaaaaatgtactcactttTTACTCACAATAAAGCCTTGCTCActctg

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-031118-200 Orthologous to human METTL26 (methyltransferase like 26).

Ensembl:

ensembl_id ENSDART00000035531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052634 lncRNA upstream 3368 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00049802 lncRNA upstream 42279 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049777 lncRNA upstream 395215 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00052633 lncRNA upstream 1167363 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 1172971 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00052635 lncRNA downstream 127826 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 127902 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049812 lncRNA downstream 337534 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052636 lncRNA downstream 609041 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049829 lncRNA downstream 709745 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00049801 mRNA upstream 41351 17951790 ~ 18009316 (+) False XLOC_025214
TCONS_00049800 mRNA upstream 103718 17939828 ~ 17946949 (+) True XLOC_025213
TCONS_00049797 mRNA upstream 110174 17933209 ~ 17940493 (+) False XLOC_025213
TCONS_00049805 mRNA downstream 1088 18062871 ~ 18080924 (+) True XLOC_025216
TCONS_00049806 mRNA downstream 35917 18097700 ~ 18104658 (+) True XLOC_025217
TCONS_00049808 mRNA downstream 327580 18389363 ~ 18396564 (+) True XLOC_025219
TCONS_00049809 mRNA downstream 337093 18398876 ~ 18400693 (+) False XLOC_025220
TCONS_00049810 mRNA downstream 337093 18398876 ~ 18403179 (+) False XLOC_025220
TCONS_00049790 other upstream 152815 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 527740 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 588782 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1321652 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1372017 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049819 other downstream 375702 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 694479 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 806052 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 830867 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 855678 18917461 ~ 18917583 (+) True XLOC_025235

Expression Profile

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