Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049815 |
| length | 1054 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | XLOC_025222 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 18424244 ~ 18435575 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005975 | carbohydrate metabolic process | biological_process |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | molecular_function |
| GO:0090599 | alpha-glucosidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | molecular_function |
| id | description |
|---|---|
| ko00052 | Galactose metabolism |
| ko00500 | Starch and sucrose metabolism |
| ko04142 | Lysosome |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-070212-2 | Enables alpha-glucosidase activity. Predicted to be involved in glycogen catabolic process and lysosome organization. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in several structures, including eye; heart; liver; muscle; and pleuroperitoneal region. Used to study glycogen storage disease II. Human ortholog(s) of this gene implicated in glycogen storage disease II. Orthologous to human GAA (alpha glucosidase). |
| ensembl_id | ENSDART00000144222 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049812 | lncRNA | upstream | 25971 | 18399317 ~ 18399843 (+) | True | XLOC_025220 |
| TCONS_00052635 | lncRNA | upstream | 228688 | 18189609 ~ 18197126 (+) | False | XLOC_025218 |
| TCONS_00049807 | lncRNA | upstream | 228688 | 18189685 ~ 18197126 (+) | True | XLOC_025218 |
| TCONS_00052634 | lncRNA | upstream | 378515 | 18040613 ~ 18047299 (+) | False | XLOC_025215 |
| TCONS_00049802 | lncRNA | upstream | 417426 | 18006111 ~ 18008388 (+) | True | XLOC_025214 |
| TCONS_00052636 | lncRNA | downstream | 235249 | 18670824 ~ 18672291 (+) | True | XLOC_025227 |
| TCONS_00049829 | lncRNA | downstream | 335953 | 18771528 ~ 18788485 (+) | True | XLOC_025229 |
| TCONS_00049852 | lncRNA | downstream | 900950 | 19336525 ~ 19341041 (+) | False | XLOC_025242 |
| TCONS_00049856 | lncRNA | downstream | 920358 | 19355933 ~ 19360577 (+) | True | XLOC_025244 |
| TCONS_00052334 | lncRNA | downstream | 1037388 | 19472963 ~ 19473197 (+) | True | XLOC_025248 |
| TCONS_00049813 | mRNA | upstream | 2736 | 18413461 ~ 18423078 (+) | True | XLOC_025221 |
| TCONS_00049810 | mRNA | upstream | 22635 | 18398876 ~ 18403179 (+) | False | XLOC_025220 |
| TCONS_00049811 | mRNA | upstream | 22638 | 18399315 ~ 18403176 (+) | False | XLOC_025220 |
| TCONS_00049809 | mRNA | upstream | 25121 | 18398876 ~ 18400693 (+) | False | XLOC_025220 |
| TCONS_00049808 | mRNA | upstream | 29250 | 18389363 ~ 18396564 (+) | True | XLOC_025219 |
| TCONS_00049816 | mRNA | downstream | 1822 | 18437397 ~ 18498674 (+) | False | XLOC_025223 |
| TCONS_00049817 | mRNA | downstream | 1901 | 18437476 ~ 18470728 (+) | False | XLOC_025223 |
| TCONS_00049818 | mRNA | downstream | 1901 | 18437476 ~ 18470745 (+) | False | XLOC_025223 |
| TCONS_00049820 | mRNA | downstream | 11999 | 18447574 ~ 18502030 (+) | True | XLOC_025223 |
| TCONS_00049821 | mRNA | downstream | 120324 | 18555899 ~ 18564029 (+) | False | XLOC_025224 |
| TCONS_00049790 | other | upstream | 527962 | 17878492 ~ 17897852 (+) | True | XLOC_025211 |
| TCONS_00049769 | other | upstream | 902887 | 17472147 ~ 17522927 (+) | True | XLOC_025202 |
| TCONS_00049766 | other | upstream | 963929 | 17395239 ~ 17461885 (+) | True | XLOC_025203 |
| TCONS_00049749 | other | upstream | 1696799 | 16724614 ~ 16729015 (+) | False | XLOC_025193 |
| TCONS_00049746 | other | upstream | 1747164 | 16668603 ~ 16678650 (+) | False | XLOC_025192 |
| TCONS_00049819 | other | downstream | 1910 | 18437485 ~ 18469009 (+) | False | XLOC_025223 |
| TCONS_00049828 | other | downstream | 320687 | 18756262 ~ 18769951 (+) | True | XLOC_025228 |
| TCONS_00049837 | other | downstream | 432260 | 18867835 ~ 18867952 (+) | True | XLOC_025233 |
| TCONS_00049838 | other | downstream | 457075 | 18892650 ~ 18892766 (+) | True | XLOC_025234 |
| TCONS_00049839 | other | downstream | 481886 | 18917461 ~ 18917583 (+) | True | XLOC_025235 |
