Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049821 |
| length | 1045 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_025224 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 18555899 ~ 18564030 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040329-2 | Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CBX4 (chromobox 4). |
| ensembl_id | ENSDART00000163036 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049812 | lncRNA | upstream | 156056 | 18399317 ~ 18399843 (+) | True | XLOC_025220 |
| TCONS_00052635 | lncRNA | upstream | 358773 | 18189609 ~ 18197126 (+) | False | XLOC_025218 |
| TCONS_00049807 | lncRNA | upstream | 358773 | 18189685 ~ 18197126 (+) | True | XLOC_025218 |
| TCONS_00052634 | lncRNA | upstream | 508600 | 18040613 ~ 18047299 (+) | False | XLOC_025215 |
| TCONS_00049802 | lncRNA | upstream | 547511 | 18006111 ~ 18008388 (+) | True | XLOC_025214 |
| TCONS_00052636 | lncRNA | downstream | 106795 | 18670824 ~ 18672291 (+) | True | XLOC_025227 |
| TCONS_00049829 | lncRNA | downstream | 207499 | 18771528 ~ 18788485 (+) | True | XLOC_025229 |
| TCONS_00049852 | lncRNA | downstream | 772496 | 19336525 ~ 19341041 (+) | False | XLOC_025242 |
| TCONS_00049856 | lncRNA | downstream | 791904 | 19355933 ~ 19360577 (+) | True | XLOC_025244 |
| TCONS_00052334 | lncRNA | downstream | 908934 | 19472963 ~ 19473197 (+) | True | XLOC_025248 |
| TCONS_00049820 | mRNA | upstream | 53869 | 18447574 ~ 18502030 (+) | True | XLOC_025223 |
| TCONS_00049816 | mRNA | upstream | 57225 | 18437397 ~ 18498674 (+) | False | XLOC_025223 |
| TCONS_00049818 | mRNA | upstream | 85154 | 18437476 ~ 18470745 (+) | False | XLOC_025223 |
| TCONS_00049817 | mRNA | upstream | 85171 | 18437476 ~ 18470728 (+) | False | XLOC_025223 |
| TCONS_00049815 | mRNA | upstream | 120324 | 18425814 ~ 18435575 (+) | True | XLOC_025222 |
| TCONS_00049823 | mRNA | downstream | 3531 | 18567560 ~ 18571115 (+) | True | XLOC_025225 |
| TCONS_00049824 | mRNA | downstream | 15777 | 18579806 ~ 18650629 (+) | False | XLOC_025226 |
| TCONS_00049825 | mRNA | downstream | 15846 | 18579875 ~ 18632257 (+) | False | XLOC_025226 |
| TCONS_00049826 | mRNA | downstream | 70656 | 18634685 ~ 18650640 (+) | True | XLOC_025226 |
| TCONS_00049827 | mRNA | downstream | 192202 | 18756231 ~ 18769763 (+) | False | XLOC_025228 |
| TCONS_00049819 | other | upstream | 86890 | 18437485 ~ 18469009 (+) | False | XLOC_025223 |
| TCONS_00049790 | other | upstream | 658047 | 17878492 ~ 17897852 (+) | True | XLOC_025211 |
| TCONS_00049769 | other | upstream | 1032972 | 17472147 ~ 17522927 (+) | True | XLOC_025202 |
| TCONS_00049766 | other | upstream | 1094014 | 17395239 ~ 17461885 (+) | True | XLOC_025203 |
| TCONS_00049749 | other | upstream | 1826884 | 16724614 ~ 16729015 (+) | False | XLOC_025193 |
| TCONS_00049828 | other | downstream | 192233 | 18756262 ~ 18769951 (+) | True | XLOC_025228 |
| TCONS_00049837 | other | downstream | 303806 | 18867835 ~ 18867952 (+) | True | XLOC_025233 |
| TCONS_00049838 | other | downstream | 328621 | 18892650 ~ 18892766 (+) | True | XLOC_025234 |
| TCONS_00049839 | other | downstream | 353432 | 18917461 ~ 18917583 (+) | True | XLOC_025235 |
| TCONS_00049840 | other | downstream | 371977 | 18936006 ~ 18967445 (+) | False | XLOC_025236 |
