RNA id: TCONS_00049843


Basic Information

Item Value
RNA id TCONS_00049843
length 725
RNA type processed_transcript
GC content 0.41
exon number 3
gene id XLOC_025236
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18936006 ~ 18967653 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAAACTCGCCTGTTTAGATCACCGAGAGACAAAAGTGTCTAGAATTGATGAACCGCATCAGAAGATTACAATTCTTACAGTGAATACCAGCAAGAATCGTTAAATCTCCACAAAATAGCACGCATAGCAAACAAAGCAGTTTACAAAACACGTCGGCGTTTCCCGACCAACGCACAGAAAAGCGGAGAAAACGCCTCTGCCACTGTTGAAGACTGGACTGAAACACTTTAGCAAGACGACAGACGATCTCCTTTTAGAATCTAAATACAGTGGATATAAAGCAACCCTCAAAACACAAGACACTTTCTAGATGAATACACGTTTGCTGAGAAAAAAGTAAACACGTGATTAGTCATGATAGCCTTCTTCATGCAACCTGGCCCTACTTTGCTTATGACATAATGTTGTGTTGAAAGACTTCCACTACAAGAATCCTACACAATCTGAGAACTTTTCTTGCTGTCTGTAATGGATTTTCTGGAGTATGATGACGCCATCGTTATTTTAATTACACCTGAAATGGCTTCACCCTCTTGTCAGGTAGAAGcttGTATCTGAGATTGGAAAGAAGCTTCCATATTGTGGGTCTAAACACTATTCTTGGCCTCAATTAAACCTGCATGTCAGCCTCTTCTAACAGGATTCATTCCAAAATATTCAGTCTTCAGTGCTGAAGTGGAACTAGTGGAAGGAGCGAGTCAAATAAATCAACCAGCTTCTACG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-181 No description available

Ensembl:

ensembl_id ENSDART00000143711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049829 lncRNA upstream 147595 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 263789 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 536237 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 738954 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049852 lncRNA downstream 394811 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 414219 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 531249 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 723626 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 1117964 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049836 mRNA upstream 12165 18846488 ~ 18923915 (+) True XLOC_025232
TCONS_00049834 mRNA upstream 15836 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049833 mRNA upstream 15836 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049835 mRNA upstream 69544 18840893 ~ 18866536 (+) False XLOC_025232
TCONS_00049832 mRNA upstream 96848 18807524 ~ 18839232 (+) True XLOC_025231
TCONS_00049844 mRNA downstream 265462 19207176 ~ 19210637 (+) True XLOC_025237
TCONS_00049845 mRNA downstream 274853 19216567 ~ 19238394 (+) True XLOC_025238
TCONS_00049846 mRNA downstream 304090 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049847 mRNA downstream 307259 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049848 mRNA downstream 357595 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049839 other upstream 18497 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049838 other upstream 43314 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049837 other upstream 68128 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049828 other upstream 166129 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049819 other upstream 467071 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049850 other downstream 371277 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049853 other downstream 407724 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other downstream 408005 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049874 other downstream 1738209 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 2083439 21025153 ~ 21030871 (+) False XLOC_025264

Expression Profile

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