RNA id: TCONS_00049845



Basic Information


Item Value
RNA id TCONS_00049845
length 2284
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_025238
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19216567 ~ 19238394 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GAAGGAACGATATCAGCGGGTATGGAAAGTGCTGTTTATAGCATGTAGAAAATAAAGCTAAAACTTTTAACGTTAAATAATTTGAGAAGATTACCGAAGAACCTCCGTGCTGCTTCTGATGGTCAGCGATGTCACTTCAGAAGGAAGCAAAGAATTGAATGCCCGCCCGTGGACATTCCGTAAACGAGTGAACCATTCGGTTAACGGGACGTTGCGTCATACTGGAGTTTTTACATAGGCTACGCGAATGCCGTGAGTGATGGCATGGCAGAATGCTAAGCTGCATTTTCTTTTACTACTGAACATGTGGATATGCTCTCAAGGCTTGTTCGCATTTGAAGTGGATGTAAACTGCTGGTGGAATCAAGCCCTTCCTGTGGATCGCGATGTGTCTGTTTTGTGCCATACAAGTGCACAGGGAAGAGCATACAAGTGTGATCTCTGCCAACTTCATGTTATCACGTCGGGGCACCAGTTAACCAGCACATGTGCCAACTCCACTGAAACCTTCAGCTTTTCTATTCCAGTAGAGCATAGAGAGCACATTAACTGCTCATGCAGTGGAAGTACCTGCAATGTGAAAGCACAAGGAGGCTATCCACCGTCTCCCCCATCCCACCCTAATTGTGTTATCGAAGACCTGGTTAAAGAAGATATTTATTGCTCCTGGACTATATCTGATGAGCCGATGATTACAACTGTGTACACTCTTCATTGGCAAGATTATGAAGGGAACGTAAATTCTGCAGAGAGTGATTGTGAAATGGCCATCATTAACCGTGACAAGTACACAAAAGGCACTCAGATGACAGTATGGGTCACTGCTAGAAACGTTTTGGGTTATGCGCGGTCTGAAGAATCTGTCTTCAACACAGGCCATATCAGGCGGCCAGACCCCCCATACAATATGACCCACATGTTTACACCACTGGAAATCTTCTGGGACATGGACTGTGACATTATGGGCACATTAGATGAGTGTCACGTGCAATACCACATGCAAAATCACATGCTAGACTGGACCGAGGTGGATGATTGCCAGAGCATGTTTCGAATAGAGGATCCACAGCCGTTCACTCAGTACAGTTTTCGCGTTCGCTGCCACTGTGGACATGAAGAGAAAGTCATGAGTAACTGGAGCTCAGTGTATTCAGTGCGCACGCCTCCTGCAGCTCCAGTTGGACAGCTGGATGTTTGGAGTGACTGCGCACCTAATTCTGACAAATCATCTTGTAACGTTTATTGGAAGGAAATGCCCCTGTCTCAGGCTCGAGGGGAAGTTACGAGTTATATTGTAACGCTGACGCTTAAAAATGGCACTGAGATTAAGCAGGTTGCGAGGCAGAAGAGAGACGCTGGAAACCAGCATCGCACTGAACACAGCTGCCCACAGCTCAGACACTTCCCTTTAAAACCCAGCGTTGTGGGGGTTTTTGTGTCTGCCAGCACCTCAATGGGCACATCCGACCCCACACTCATGCCATTTCCTGAGAGggAACAGTCTATACCTGAGGTGCATCTGAATGTAAGGAGTGAGAAGCAGGCTTTGTTGGCCTCATGGTCTGTTCAGCCGGAGTTATCTGAGCGCGTCCTGCAGTATGTAGTCCAGCACGTGTCTGTCGCACCTGACCGCCCGTGCCTGAACTGGCTGAGAGTAGACAGAACACAGAGCTCTGTCACACTCACAGGTGACTTTAAGGACTACATGGCGTATAATGTGTCACTCTTCGCCATCTTTAACAACCACAGCACTTTCCTCAATTCATCTATTGCATACACTCGTCAAAAAGTTCCTCCTAAAGTTTCAGTTATCCAAGTGACGGACATTTCTCACTCGTCTGTGACTCTGACATGGAGCCCCATCCCTGTGAATGAGAGCAATGGTGTCATCCTGCATTACTTAGTGGGCATCAACGAGACAGCTTTAATGTTTAACGTGAGCAGTGCCAGGACAAGTATACTTCTGTCAGACCTGCAGCCGTCCCGGCAGTATCAGGCCTGGGTGAGCGCAGTGAGCGAGGCCGGTGAAGGCCCGAGGAGATTCACCACCTTCTCTACCAGTGACAAAACCAATGTTGTTATATATGTGGTGCCCACACTGACAGTCATGGTGGTGATTGGCCTGATATTAGTGTTTATGTTACACATCATGGTAAATTTATTTCTGCTGTTTACCCGCAGGTTATCTTACTGTCACTGTTTTGAGAAGATTCCAGATCCAATAAACAGCAAATCATTTAAACACATGAACTTACAGGTGAGAATCTACTTTTTTGTGTTATAA

Function


GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080107-6 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000134433

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00049829 lncRNA upstream 428082 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 544276 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 816724 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 1019441 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049852 lncRNA downstream 98131 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 117539 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 234569 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 426946 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 821284 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049844 mRNA upstream 5930 19207176 ~ 19210637 (+) True XLOC_025237
TCONS_00049841 mRNA upstream 248914 18936009 ~ 18967653 (+) False XLOC_025236
TCONS_00049836 mRNA upstream 292652 18846488 ~ 18923915 (+) True XLOC_025232
TCONS_00049834 mRNA upstream 296323 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049846 mRNA downstream 7410 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049847 mRNA downstream 10579 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049848 mRNA downstream 60915 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049849 mRNA downstream 60915 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049851 mRNA downstream 97892 19336286 ~ 19355200 (+) False XLOC_025242
TCONS_00049840 other upstream 249122 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049843 other upstream 274853 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049842 other upstream 276867 18936046 ~ 18939700 (+) False XLOC_025236
TCONS_00049839 other upstream 298984 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049838 other upstream 323801 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049850 other downstream 74597 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049853 other downstream 111044 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other downstream 111325 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049874 other downstream 1441529 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1786759 21025153 ~ 21030871 (+) False XLOC_025264

Expression Profile


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