RNA id: TCONS_00049852


Basic Information

Item Value
RNA id TCONS_00049852
length 1145
lncRNA type retained_intron
GC content 0.44
exon number 10
gene id XLOC_025242
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19336286 ~ 19355200 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACGTGAGAGTTTGAATTATCGAGATATTAATCTGATCTCAAATCAGAAGATACCGCACAGTTATACGACAACATGTCGGATCTCAAGATTAACAAGAAGTTTGCAGAGAAGTATGAGAAATATCGCCAGAAAGAGGAACTGCAGAGACTGAAGGACCGTTATGGAGACCAGGAAGAGGAAAATTCATCAAACTCCTCCGAATCTGACTCTGATGACAGTGAAGTggaGCTGGATCCAAAGCTAGACAGAGATTTTTACAGAACTCTCTCGCTTCTGAAGAAAAAGGATCCAAAGATCTATCAGAAAGATGCCAAATTCTACACAGAAGAAACATCTGGGTCAGGCAGCGATGAGCAACCGTCCACTTCGAAACAGTCAGAGAAACCCATGTTCCTTAAGGACTATGAGAGGAAAGTCATCCTGGAGAGAGGAGGAAAATATGAAGACGATGACAGTGCTGATGAAGAAATCTCCGCAAAGATGCAGGAGAGAGCTGCATCTCCCACATACATCCAGGAGCAAAAGGAGATACAGGAAAGTTTGCGCAAGTTTGTTCAAGACAGTGATGATGAGGACAGTGATGGTGACGGACAGTTTTTGACACGGAGGACCAAAACACAAGAGGAAAAAGTGCTGACACTGTAGCTTTCGGCTGGATGGATGTCATATAattgtgtttaataaaactgtatcCAGTGATAGGCCTGTTGTTTATTTCTGCGTTTAAGGACAAAGAGGAAGCTGACTATGTGGAATGGCTGAAGGGTCAAACAGAGCTGGATGAGAAAGAAGAACTTAAGGACATGAAATATCTGCGGGACTACTGGAACAATCCTCAGTTAGATGAGAAAGAGTCTTTCCTGCGGGACTTCATGCTCAACAAGGGCTACatggaggaggaggatgaagagagGATCCCCACATATAATGAGCTCATGCAGGATGATGTGGATGATTCTGAGGATGAAGGAGAATCATTTCTGCATAAACAGGAAGACTTTGAGAGGCATTACAACTTCCGCTTTGAGGAGCCTGATGCTGGAAAAGTCAAAACATATCCCCGCAACATTGCAACTTCTGTCCGCAGCAAAGACGACAGGAGAAAGAGGAAGAGAGAAGAGGTTAAAGAAAGGAAGAAGAAGG

Function

GO:

id name namespace
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0030686 90S preribosome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040915-3 Acts upstream of or within definitive hemopoiesis and ribosome biogenesis. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in eye; immature eye; and somite. Orthologous to human KRI1 (KRI1 homolog).

Ensembl:

ensembl_id ENSDART00000110548

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049829 lncRNA upstream 548040 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 664234 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 936682 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 1139399 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA upstream 1139399 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049856 lncRNA downstream 14892 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 131922 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 324299 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 718637 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 722468 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00049849 mRNA upstream 12836 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049848 mRNA upstream 15121 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049847 mRNA upstream 54000 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049846 mRNA upstream 54647 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049845 mRNA upstream 98131 19216567 ~ 19238394 (+) True XLOC_025238
TCONS_00049855 mRNA downstream 14828 19355869 ~ 19363981 (+) False XLOC_025244
TCONS_00049857 mRNA downstream 105956 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049858 mRNA downstream 119950 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049859 mRNA downstream 127736 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049860 mRNA downstream 268597 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049850 other upstream 23418 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 369080 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049843 other upstream 394811 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049842 other upstream 396825 18936046 ~ 18939700 (+) False XLOC_025236
TCONS_00049839 other upstream 418942 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049853 other downstream 8397 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other downstream 8678 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049874 other downstream 1338882 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1684112 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1684112 21025153 ~ 21030873 (+) True XLOC_025264

Expression Profile

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