RNA id: TCONS_00049856


Basic Information

Item Value
RNA id TCONS_00049856
length 773
lncRNA type retained_intron
GC content 0.33
exon number 3
gene id XLOC_025244
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19355869 ~ 19363981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCGTTCAGTCTGGaaatatcaCTAATGCAGAGATGTCCCATAGCATTTCGATGCATGATGATGACCTTGAGAAATTAGGAGAATCTTTGAATGAGATCATCATGAGCAGTAAGGCAGAAAGTGTTCTTCAAGCAGCAAGGAAAAAAAAGCAGGAGTTCTTCGACCACTACATCAAGACTAAGAAGACGCTTACTGAGCTCCTAAATGATCTTGTGCACACAGAAGAGGTGGTCGGCCAGAAGCTTCTGGATTTAGACCAACAGAAAAGCCAGATGATGCAGGAGATCATGAAGATGGAGCAGGAGGTGCAGAGGAGCCAGTCTAAAAGTCAAAACCTGGACTCAGAGCTGGAGTATCCTTCAGTAGCATTTTTTCCTCAAACTTAAATAATCTTTTTGTATAACTGCCTGCCATATTTAACTAAATTGCTGTAGTGCTAAAAAACTGGAAATAAATTGGTGTAATGGCACAAATGTTTATTTGTGCTTAACCATAACAACCTAGTACACTTCTAATTtggaattttttatattttgcggTTCCCTCTTCCACTATTCCATtagaatatataattataattctgAGAATATACAATGTataactataattaaaaaaaattatcattggAACAGACAATTAATGTTTTTTAGTGTGAATTTTTAATTGTATGTTAAATGGTGAATTTGAATGTAGAACATGTTTGAATGTAgaacatacaatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-456 Predicted to act upstream of or within cell division. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC24 (SPC24 component of NDC80 kinetochore complex).

Ensembl:

ensembl_id ENSDART00000135223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049852 lncRNA upstream 14892 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 567448 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 683642 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 956090 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 1158807 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00052334 lncRNA downstream 112386 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 304763 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 699101 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 702932 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 837725 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00049851 mRNA upstream 733 19336286 ~ 19355200 (+) False XLOC_025242
TCONS_00049849 mRNA upstream 32244 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049848 mRNA upstream 34529 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049847 mRNA upstream 73408 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049846 mRNA upstream 74055 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049857 mRNA downstream 86420 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049858 mRNA downstream 100414 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049859 mRNA downstream 108200 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049860 mRNA downstream 249061 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049861 mRNA downstream 260457 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049853 other upstream 995 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 6116 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 42826 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 388488 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049843 other upstream 414219 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049874 other downstream 1319346 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1664576 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1664576 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2698736 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 3208410 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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