RNA id: TCONS_00049859


Basic Information

Item Value
RNA id TCONS_00049859
length 4327
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_025247
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19468777 ~ 19477473 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTACTGGTGTAGTTCGCACTTTGAGAATGGCTTCAACTACTGAAAGGGATTATACTTGTCCTTTGTGTGGTAATATTTTCAGGTTTCCGGTTATTTTGTCGTGTAGTCACAGTTTTTGTAAAGAATGTCTTCAACAGTTCTGGAGATCCAAAAAACCTAGAATGTGTCCTCTTTGCAAAAAATCATCAAAAGCTGATCCTCCTCTCAATCTTGCGTTGAAAAACCTGTGCGAGTCGTTCCTGAAGGAGAGAGATGAGCAGCGTTCATCCATGTCTGAGGATATCTGCAGTTTACACGGTGAGACGCTCAGACTTTTCTGTCTGGAGGACCAGCAGCTTGTGTGTTTAGTGTGCAGAGATTCACAGAAACACCTCAACCATTCATTCAGACCCATCAGTGAAGCGGTTCACTTGTGTAAGGAGCAGCTCAAAACAGAACTGAGGTATTTAAAGGGGGATCTTCAACAGAGAGAATGGGTGAAAGTAGCATTTGAGAAAACTGTTCAACACATCGAGTCTCAAGCTGATTACACCGAGCGTCAGATTAAAGAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAAATGAAGAAGAAGCTACAATCACTGCACTGCGAGAGGAAGAGGTGGAGAAGAAGCAAAAGATAAAGGAAAAGCTGAAAGAGATGAAGAGACACATCTcaacactttcacacacacttcAAGACATGGAGAAGATGATGGAGTCCGATGATGTCTGCTTTCTCAAGGAGTTTCCAGACTCAATGGAAAGAATGCAGATCTCAGAGCTGGATCCACAGATACCTTCTGGAGCTTTGATTCAAGTGTCAAGTTACTTGGGCAACCTTTCATTCAGAGTCTGCAATAAGATGCAGGACATCGTGCAATACACTCCAGTCATTTTGGATCCAAACACGGCTAATCCGCGTCTCCTCCTGTCTGATGATCTGACCAGCGTGAAATCTCTTGAGTTTTCTGAAAAACAGCTTCTTCCCAACAATCCCGAAAGATTTGACTGGTTTTTCAGTGTTCTGGGTTCAGAGGGTTTCAACTCGGGCACACACTGCTGGGATGTGGAGGTAAAAGGGAGTTCAGGCTGGAGCATAGGAGTAACCACAGCATCACATGAAAGAACAGGAGGGGATATCTTTGCGACTGATATCTGGAATGTTAAATATAATGAGTCTGTTTTATATGAAGAATTCTATTACCAGTTCCCAAAACCCAATAATGAATTTATTGTTCAGCGAGAGCTTGAGCGTGTGAGAGTTAATCTGGACTATGATGCAGGAACCGTGTCCTTCTCTGATCCTGTTACTAAAACGCATCTACAGACATTTACAACCACCTTCTCTGACACGGTCCTTCCATTCCTGTGTTGTTATGACTCTCTGAAGATCTTACCATACAGTGCTCTGTAAATGTTACACCAGTATGTCCAGAAGAGATCTATATTTAAGCTGTATCACGCCAGTGAAAATGCAGTAACACTTTGGAATAACATTCATCATATTGCcctgcttgattctgattggctaatgagcATTCTAAGGTGTGCTGTAATGTTCAGACAAACACACAGGTAAAGTActttagttttatatttgtattaactGCATTAAAGTTCCAAATTGATATGTTCAGTGATTTTGATTAGTTCTGAGCACGCAATATAAGCAAATAATCAACTCCAGTCTATTGAATTGTTAGACAATAAATCCACACCTTGCATCGTGGCCACATCACCacctcaggtgtgcattattttcttatAACTCAACGTCAAACGATGTAAAATAATCTTTACTTAGTAAATCATTATTAgtcttgttcatttattcgtaCATTgaatccagaaagtattcatagcacttcatttttgtcacattttttttatgttacagccttattccaaaatggaataaattcatttattttctgaaaatacacacaataccccataatgacacttgtctttgggaatttctgctaattcctctttgcagtaccaggtgtacagccattttcagatctctccagaaatgttcaataggatttaggtctgggctctggtgggccactcaaggacattcacagagttgttgtgaagccacttcattgatattgtagcagtgtgctttgggtcattgtcgtgctggaagatgaactgtcgctccagtctgaggtcaagagcactatgaagcaggtttttattcaggatgtctctgtacatcgctgcattcatctttccctctatcctgactagtcttccagttcctgctgctgaaaaacatccccacagcataatgctgccaccaccatccTTCATTGtagagatggtattagcctgaTGATGAGCGGTGTCTAGTTTTCTTCAAAAATTATGTCTGATATTCACTGCagagagttcaattttagtcccatcagaccagagaatttagtttcttatgatctgagagtccttcagatgccttttggcaaattccaggtagGGAGTGGTTTTCGTCTGGCCACCATACAGgcttgattggtggattgctgcacagatgggttgtccttctgtaaggttctcttctctccacagaagaacgctggcgctcagacagagtgaccatcgggttattgatcagcttagatggtcggccagctctaaaaagagtcctggtggttccaaacatcttccacttacaggtGATGGAGGCCACCGTGCTCACTGGAATTTTTAGAGCAGCAGAAGTGTTtatgtaaccttccccagccttgtgcctcgagacaatcctgtcttggaggtttacagacaattcctttgtcttcggTGGAAACGGtggaatgtacctgagctcaatttagagcttcacagcaaaggctgtgaatacgtataatcatgtgatttttcaggttttttattttcaataaatttgcaacaatttcaaaaactcttttttcacattgtcattatggggtgttgtgtgtagaatttgaggaaataaattaattcaatccattttggaataaggctgtaagcatacaaaaatgtggaaaaagtgaagcgctatgaatactttccggatgcactgtaaaaccaaatATTCTTTTGTGAAGTGTGTGAGGAACTAAAAGAAGATTTTGATCTAAGAGATATCACGTGAGTGTAAAATGGAACAGCTCTGAGTGATATATTAGGGCTAGATCTATAGATTTATATACTGTCCcagtaaaacactttaaaatcaatTATGAATGGGATGGTCAGCCAGATGGAGGTCCCCTTACTGAGAAGAGGGGTAACATGGTCATGTTTCCTGCTATTACAAATGAATCTAGTGCATTGCAGTAGTCTAACCATAAAGTAATAAAAGCGTGGACAGCCATCTCTTGTGTGGTGGGATTTAAGAAATGTTTAACTTTAGACGGCAAGCGGAGTTGATAAAAACTGGAGCCAATAACTGAACTGATATGCGTTTCTGTCAATCAATCAAGAAAGGCACCCATattcacaatataaaaaaatatggggTAGCCAGATCTCTTCCAAGCACCTTTGTAAGGTACTAAGAGCGAGAGGGTCATTCCTCTTAATAGGTAAGCAAATCTGCATGTCTTCAGCATTGAAATGGAAGTACATtatataatgtttaacagaacatATATTATAGTGGCTACAAATTTGAGAtgctgtgattttatttttaacaaaatgctTTAAAGTGTTATTAAATCGTCAGCTAATTTATAATCACGATTTTTGAACCAAATCTTCACATGATTTTAACCACACTGCTATTGCTTTAGCTAATGTTTCTTCAGACAGCTGCAAATACGAGACAATTTGCTTGCTAACAAGCATCCTTAACATTACATAATGATAAACACATCAGTTTATGTAGATTAAAATGCTTAGAAAGTTATCATTGAAAATGGTCTGAAAATGTACAAATGATTTGTTACACGCTGATTATAAATCAATGTGCTATATTATGCAATTGAATGCTTGAAAATGTCATTAAACTGGTTATTTAAATTGATTCAAATcagttatatagttttttttaatccacCTTTTCAACTGTGGCAAATGTGTAAAACTGTAAGTAAAGCCTATTCATGGCATATAATTATTCATAGGTGTAGTTGTTCTAACCATGTGTGAATATGACAAGAATAACTATGACTATGACAAATTTTCTGGCATGAGTCTACAGTAGTTTTACGTTTTTATAATGATCATTATACtctttttgttaaacatttgGATCGCTCAAACCAACCAAATATCTCTTTGTTTGTGAAATTATAGGCTAATCCTTCAGTCATTAGATGGTAGTGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000079333

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049856 lncRNA upstream 108200 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 127736 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 680292 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 796486 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 1068934 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00049864 lncRNA downstream 187867 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 582205 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 586036 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 720829 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 1013729 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049858 mRNA upstream 2762 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049857 mRNA upstream 11004 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049855 mRNA upstream 104796 19355869 ~ 19363981 (+) False XLOC_025244
TCONS_00049851 mRNA upstream 113577 19336286 ~ 19355200 (+) False XLOC_025242
TCONS_00049849 mRNA upstream 145088 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049860 mRNA downstream 132165 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049861 mRNA downstream 143561 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049862 mRNA downstream 187846 19665319 ~ 19682819 (+) False XLOC_025251
TCONS_00049863 mRNA downstream 187865 19665338 ~ 19682811 (+) False XLOC_025251
TCONS_00049865 mRNA downstream 208400 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049853 other upstream 113839 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 118960 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 155670 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 501332 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 1202450 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1547680 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1547680 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2581840 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 3091514 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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