RNA id: TCONS_00049864


Basic Information

Item Value
RNA id TCONS_00049864
length 759
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_025251
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19665319 ~ 19682819 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAAGTAAGTGACAGGAATTGAGCAATATGTGTCCTCGAATAATAACTGGTTGTCTTTATGCATGTTTtgatacattttagttttttggcAGTCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0016427 tRNA (cytosine) methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0052735 tRNA (cytosine-3-)-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-462 Predicted to enable tRNA (cytosine-3-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to several human genes including METTL2A (methyltransferase 2A, methylcytidine).

Ensembl:

ensembl_id ENSDART00000123938

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052334 lncRNA upstream 192143 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 304763 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 324299 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 876855 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 993049 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00052637 lncRNA downstream 382647 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 386478 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 521271 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 814171 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049875 lncRNA downstream 1236279 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00049861 mRNA upstream 15805 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049860 mRNA upstream 54350 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049859 mRNA upstream 187867 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049858 mRNA upstream 199325 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049857 mRNA upstream 207567 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049865 mRNA downstream 8842 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049866 mRNA downstream 10186 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049867 mRNA downstream 55142 19732173 ~ 19813526 (+) True XLOC_025253
TCONS_00049868 mRNA downstream 237301 19914332 ~ 19971774 (+) True XLOC_025254
TCONS_00049869 mRNA downstream 324577 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049853 other upstream 310402 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 315523 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 352233 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 697895 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 1002892 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1348122 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1348122 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2382282 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2891956 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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