RNA id: TCONS_00005980


Basic Information

Item Value
RNA id TCONS_00005980
length 1912
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_002533
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4038226 ~ 4040505 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTACTGAGAAATGACTGAGATATGTCATGATGAGAGTCCACATATGCAAAATCTGTTAAAAAGACAATGAATCACTGGAGAGCAAGAGAACCCATGCTGTAATACTGACACTCAATTCACATAGAAGTCAGGTCAGGTGCGTCGTCACCATctcaataaaaatatgaaaatgtttttcgACTTTTTTTTGTGCATGGTTTGCTtctttaacaatataaaaacgtATAATACTGATtgcaaaacattgttttaatttacaaaacaaataactgTAATAACAATTAccatccataataataataataataataacaataacaataattagattttaaaaatgaaacaaaaccaaccaaaaaaaaattaaaaatcaaaagaaataaaCCAGTCAAAGCCGCATCATCTTCACTAACACAAACAGCGAgcctttttgtctttttttcttgaaATACCCTTTTGGtataatctcttttttttttaagtctgacATGCCTTGTGCAAGTCTAAGATCAGTCTGTGTATATAAATGGTCCTTTACAGTGTAGGTGGAAGCATAACGATTATATGCTCTGCACAGAAAATAAAACAGTAGGCAGTTTGAGGCTTCTGGGAATGTGTACTTCCTAACCCAGACTGTCCTTTTCACTGTTTTCAAGAGTTATAAATACTCCaaatattcctttattaagagAAGCCAGTCATGGGGGAGAGAGAATCTCAACATTTAGATGAAGGGAAGAACCGTCCGGGTGATAAGAACTTGTAGCCGTTCCCTGTAGGCAGTCGGATAGGTTGCAAACCCGGACTGCTTCTGGTGGAAGCTGTTGGAGAAGGTGCAACTCTCTTGGGATCGATCTTGCGATGGCCATTGGGTGGATTTCTGTGCTCGAGTGCCACATTCTGGTTGGGGGAATCCTGACCTGTCATAAGTAGGTGAAGGTTGGCTGCCTTCTTTAAGAGATGTTTCGGATGTGGCAGGACTGTTGTATCCCGAGCTGACCTTCTGGAGGGAGGACGTCCGGGATGGTGGTTTGGGGCGTGCTGGAAGGGGCGACGACTGTGCCTTGATGCTTGCCCTGCTACTGGGACGACTGAATGCACTTGTCTCTGAAGATCGGAAAGCAGACCCTCCTGTTGGGGTCGGGGGACCTCCACCACTCATCCCGTCACCCAGAGGCACACTTCTCTGCAACGTCTCAACAGCTCGCATGTGGCTTTGCGTTTCTTCCAGAATCTTTTGCGCCAGTTCTTGTGGGTCCAAAGGAGCTCCGGGCGTGCGTTCCTCTTGGGATTTCACAGTGCTGTCCGTCTCTGTGCTGGACTGATCAGACTCCCCTGTGTCAGAGCTGCTCACCTTCCCAACCTTCTGGAAGGGCGAGTTGGGACTGGGAACCAAGGTGGCTTTGACAGGAGACGTTGGGGTGCTTACACTTCCCCTGGAGGACACGGACACAGCATAACCCCTACCGGCCCCACCACGCGCAGCACCTCGATGATTCCTGTGGTTTGCGGGACGAGGGAGTGTGTCACATTGGCTACCTAGTGGCTCGCTACTGATTATACTGTATCCTTCGTACTCTTCATCCTCATGTCCTCCAACGGCTCCATGTGGAGATGAGCGGCTGCGAGGAACTACCGTGTGCCGATGGGATGCGAACAGCCCAGCTCCCCCTCGATGCCGCTCCAGTTCCTGCTGCCTTGAGCGTTGGCTGATAAACTCGGACGCACCCTCAGGACGGGATAGGAAGCTCATGGAGGAGGCAATGGAGCTCAGGCTGTACACCGAGATGGCATCCGAAGCCAGGCTGTCAGGGCATGGAGGGGAAAAGGGCGGGTTGGGGTAGCCCATTGGCAGCTGGTGGCACACAGACTGTGCAGAGGCCAGAGACTCCAGAGACGATGAACTATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005979 lncRNA downstream 81377 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00004721 lncRNA downstream 610868 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00004718 lncRNA downstream 622073 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00005978 lncRNA downstream 711595 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00005977 lncRNA downstream 1138922 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00005981 lncRNA upstream 55366 4095871 ~ 4099183 (-) True XLOC_002534
TCONS_00005982 lncRNA upstream 467884 4508389 ~ 4577852 (-) True XLOC_002537
TCONS_00005983 lncRNA upstream 533049 4573554 ~ 4583009 (-) False XLOC_002538
TCONS_00005745 lncRNA upstream 541857 4582362 ~ 4583020 (-) True XLOC_002538
TCONS_00005984 lncRNA upstream 771799 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00004719 mRNA downstream 610596 3419832 ~ 3427630 (-) False XLOC_002528
TCONS_00004720 mRNA downstream 610637 3420488 ~ 3427589 (-) False XLOC_002528
TCONS_00004717 mRNA downstream 621968 3397871 ~ 3416258 (-) False XLOC_002527
TCONS_00004715 mRNA downstream 643936 3364650 ~ 3394290 (-) False XLOC_002526
TCONS_00004716 mRNA downstream 643970 3366103 ~ 3394256 (-) True XLOC_002526
TCONS_00004725 mRNA upstream 239016 4279521 ~ 4316015 (-) False XLOC_002535
TCONS_00004724 mRNA upstream 239016 4279521 ~ 4316015 (-) True XLOC_002535
TCONS_00004726 mRNA upstream 326925 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004727 mRNA upstream 900262 4940767 ~ 4961923 (-) False XLOC_002541
TCONS_00004728 mRNA upstream 912847 4953352 ~ 4961929 (-) True XLOC_002541
TCONS_00004723 other downstream 269460 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 531572 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004703 other downstream 1162491 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 1162491 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 3698199 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004736 other upstream 978053 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 979681 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 979772 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004756 other upstream 1909958 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 2377200 6417705 ~ 6431288 (-) True XLOC_002557

Expression Profile

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