RNA id: TCONS_00004725


Basic Information

Item Value
RNA id TCONS_00004725
length 3243
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_002535
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4279521 ~ 4316015 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGAAGAACAGAATCGGTTTGGATTTGTGCAGTCAGTTTACATATTAGTAGGGGCTGCCTTTTCACCTGTTTGGAGAGCGCCGCTTTGATAATGATCCTCGTTCCTCCGGCGTCTCTGGCGCATCCACAACCATGTCAGATTCTGAAGAGAATCGGACATACGGTGAGAGTCGGAGCTCTGCATCTTCAGCCTCGAGTATTCAGGCAGGATTCCTTCAGTGGGAGAGATCTGGACTGGGATGCGGACAGAGAAATTGACCACGAAGAAGACTGGAGGGGTATCAGGACTAAAAGCTCAGTGAATAACCTCAACAAGGCCTCCAAAAGTAAAACCGTACTCAAACAAGTGGCTCCGGATGTTGTGTTTCTGCCACGAGACTCTGTATTACTCGCTTCAGAGAGCCTCAATCGAGTGGCGGGGCTTTTACCTTACAACCTCACGCTCGAGATTGTCATGGCTGTGGAAGCAGGGCTTGGAGAATTACCTGCTTTCTCCTTTTCCTCTTCATCTACACCTGCCTGTGCGGATCCTGTGTCGTTCCTGCAAAGTGTTTGCCACACTGTCATTGTTCAAGGAGTTTCTGCCATCATTTCGTTTCCTCAAAACAGGGACGAACTGGTGAAGTTGGAATTTATTGCCTCAACGCTGCAGATTCCAGTCATCAGCGTCGTCCAGAGTGAATTCCAACGACAGACTCAGAACTTACTTCATTTCCAGATGGCCATGCAAAATCCCCAAACCTCTCAAGCCAATCTCATCTTCTCCCTGCTGTCCATGAATAACTGGTTCGATGTCAGTCTGGTGATGTGTCAACAGATGAACATATCAGACTTTGTTTTCTTGCTCCACAACAACTCCAAATTTCACCTGGGAACCGTCCTAAAGATTTCCACCAACAGCAGCTCCAAAAACGACTTTCACATATTCCTGCAAGCCCAGCTGGAGTCCATCAAGGACTCGACGTCTACCTTAGTGACCTTCGGATGTGACATCAGGGATATTAGGAGAATCTTCACCACTATTGCAAAGTTTGGTTTGATTCTTCCTGATTACCACTGGATTATAGGAGACTCTCAAAATGTGGAGGAATTACGGACCGAGGGGCTCCCCATGGGACTTCTTGCACACGGGCGTATGGGCGAGCCTTCGCTGGATCACTATGTCCAGGATGCTTTGGAGCTGGTGGCGCGAGCGGTGGGATCTGCCGCCACTGTCTCTCCACAGCTGGCACTGATTCCTGGCACCACAAACTGCCTGGCAAGGCTTGAGGCTAAAAATCTCACATCAGGAACCTTCCTGTCCAGATACATGGCCAGCACTTCTTTTGACGGCCTGAGCGGCTGCATCAGTGTTCAAGAGGAATCCACCATCATCTCTGAAAGCCATCACTTCATATGGAATCTACAACATGACCCAATAGGGAAGCCCATGTGGACCCGTCTAGGCAGCTGGAAGCATGGCAAGGTGGTTATGGATTATGGTGTTTGGCCCAATAAGAGACGGTCCCAGCCAGGAGCAGACTGGCGCCATTCCTCACGTCTACACTTACGAGTCGTCACTCTAGTAGAACACCCGTTTGTCTTCACTCGAGATGTTGATGACGAAGGTTTGTGCCCGGCTGGCCAGTTGTGCCTTGACCCCCTAACAAATGATACAGCCTTACTGGAAAGTCTTTTTCAGGGTCTGCAGGGTGCCAATGACACTGTCCCGTTGGAGTTTAAGAAATGCTGCTACGGCTATTGTATTGATCTATTGGAGAAGCTGGCAGAGGACATGGGGTTTGATTTTGACCTCTACATTGTTGGAGATGGAAAGTATGGAGCGTACAAGAATGGTCGGTGGACAGGGCTTGTCGGGGATCTCATGAGCGGAGCAGCACATCTGGCTGTGACTTCTTTTAGCATCAACTCAGCACGCAGTCAGGTGATTGACTTCACCAGTCCTTTCTTTTCCACCAGTTTGGGAATCCTTGTCAGGACTAGGGATACTGCCGCACCTATTGGAGCCTTCATGTGGCCCCTGCACTGGAGTATGTGGCTGGGGATATTTGTGTCTTTACATGTCACGGCTGTGTTCCTGACTTTATATGAATGGAAAAGTCCATTCGGAATGACCCCGAGGGGGAGGAACAGGGATCGTGTCTTTTCTTTCTCCTCAGCGCTAAATGTTTGCTACGCAATCTTATTCGGCAGAACTGCCGCCATTAAGCCACCTAAATGTTGGACCGGCAGATTCCTCATGAACCTCTGGGCCATATTCTGCCTGTTCTGCCTGTCAACATACACAGCAAATCTCGCAGCTGTAATGGTTGGTGAGAAAACCTACGAGCAACTCTCAGGTATACATGATCCCAAGCTTCATCATCCATCACAAGGTTTCCGCTTTGGAACCGTTCGGGAGAGCAGCGCTGAGGACTATGTGAAAAAAAGCTTCCCAGAGATGCACGAATACATGAGGCGATATAATGCCCCTACGACCCCTGATGGGATAGATCATCTTAAGGATGATCCCCAAAAGCTTGATGCTTTTATAATGGACAAAAACTCCCCTCTGACTTCAAATATCTCAGAGTTGGTCAGTCAGTACAAATCTGATGGATTTATGGACATGCTGCATGATAAGTGGTACAAGGTGGTGCCGTGCGGTAAAAGAAGCTTTGCAGTCACTGAGACTTTACAGATGGGGATAAAGCACTTCTCAGGGTTATTTGTCATGCTATGCGTTGGAGTGGCCCTGTCTCTCCTCACCACCCTGGGTGAACACATCGTCCATCGCTGGGTGATTCCCAGAATGCAGGAGTCAACAGAGCATAAGTACTGGCTCCACACCAGTCAAAGATTACATCGAGCACTTAATCCGACATTCAAAGAAGACAAATTGCAGACAGTTGCAAAACCGGAGAAAAGCTGCAATGTTGGAAACAACCAGCAGATGCCATGGAACTCTTTGGGAACCCCCAATTGCAACAGACGAAAACTGTCCAATCAAGAGGGGCAAAATGACCTGGAATGCTGCCATTGTAAAGAACTGCTGTGTCCACAGGAGAAGAGGCAGCTTCCATTACAAGCCACATCTAACGGAAGAACCGACTTACTGGGTCTGGCCCAGAACCCAATCGTACAGGAATTAACAGACCTGGAAACGCAAATCCAGCTTATCAAAAAGCAACTACAGCTTGcaatgaagaagaaaaaagagcTGGAGCAGTATCAGAAGACAAAGACTTTAACCGAGTCCTAG

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05033 Nicotine addiction
ko05034 Alcoholism
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-130530-780 Predicted to enable ionotropic glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human GRIN3A (glutamate ionotropic receptor NMDA type subunit 3A).

Ensembl:

ensembl_id ENSDART00000180867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005981 lncRNA downstream 180338 4095871 ~ 4099183 (-) True XLOC_002534
TCONS_00005744 lncRNA downstream 233204 4032478 ~ 4046317 (-) True XLOC_002532
TCONS_00005980 lncRNA downstream 239016 4038226 ~ 4040505 (-) True XLOC_002533
TCONS_00005979 lncRNA downstream 322672 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00004721 lncRNA downstream 852163 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00005982 lncRNA upstream 192374 4508389 ~ 4577852 (-) True XLOC_002537
TCONS_00005983 lncRNA upstream 257539 4573554 ~ 4583009 (-) False XLOC_002538
TCONS_00005745 lncRNA upstream 266347 4582362 ~ 4583020 (-) True XLOC_002538
TCONS_00005984 lncRNA upstream 496289 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00005985 lncRNA upstream 496289 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00004719 mRNA downstream 851891 3419832 ~ 3427630 (-) False XLOC_002528
TCONS_00004720 mRNA downstream 851932 3420488 ~ 3427589 (-) False XLOC_002528
TCONS_00004717 mRNA downstream 863263 3397871 ~ 3416258 (-) False XLOC_002527
TCONS_00004715 mRNA downstream 885231 3364650 ~ 3394290 (-) False XLOC_002526
TCONS_00004716 mRNA downstream 885265 3366103 ~ 3394256 (-) True XLOC_002526
TCONS_00004726 mRNA upstream 51415 4367430 ~ 4375190 (-) True XLOC_002536
TCONS_00004727 mRNA upstream 624752 4940767 ~ 4961923 (-) False XLOC_002541
TCONS_00004728 mRNA upstream 637337 4953352 ~ 4961929 (-) True XLOC_002541
TCONS_00004729 mRNA upstream 653619 4969634 ~ 4980150 (-) True XLOC_002542
TCONS_00004730 mRNA upstream 684608 5000623 ~ 5016997 (-) False XLOC_002543
TCONS_00004723 other downstream 510755 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 772867 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004703 other downstream 1403786 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other downstream 1403786 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004658 other downstream 3939494 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004736 other upstream 702543 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 704171 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 704262 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004756 other upstream 1634448 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 2101690 6417705 ~ 6431288 (-) True XLOC_002557

Expression Profile

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