RNA id: TCONS_00052646


Basic Information

Item Value
RNA id TCONS_00052646
length 1666
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id XLOC_025274
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21929928 ~ 21997558 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACATTTCAAACAAACAAGCCTGCATGACAACCCATTACTGCAGTGGAAATTTAACAAGAGaaaatggaACACCTAGTTGAGAGTCCGTCATTCTTCCCATTAGGACCCAGTGGAGACATCAACCCGATGTCGCGTCCTGTCTTGGTTGAGCATTCTCCGATCACCTTAAGCAGCTGTCGCCTGGAGATATCTTATCTACAGAAGAGCAACACTTCAAACCGTAATCCTCAGCCGACTGACACCCTCTTGACACCCAGTGTAGCCATCTATTGTATCTGAATGAAGGCTTCCTGCATGTCGAATTTGATCATTTCTCACATGCTCGCACACATCTGTGGATCGCTTTTGTAAAGTCCCAGACCACCGAGGAAGAAGAGAATACAACAGAAAAGGTGGGGAAATTGTTGTTTGGattctctttttttctgcttcTTAAAAGAAAGGTCAACCCCTTCATCATATAGCTTTTCAAGACATCAATCTCAGTCAAGAGGCTTTAAAGAGAAATGCATGAAACCATTATTTGAATTTGAAAGGCAGTGTTTGAGAAGgtaaaggtgatttttttttttttttttcccctctctctcctcttcactTTCGTTTGAATCAGAGAGGTGAAATATTGTGTGTAATACAATAACACTGGGGGTGGGGTGGAGGAAATGCTATGCACTTTGCTTCAGTCACACATCTATTTCAGCAGCATAATTTGATTCATCAAAAGTCTGTATGTATGCCAGAATGTATGTGCGTAGCTGTGCGGTACTTTTTTTCCAGTCTCGCTCTAAGATGAAATCCTgtctttttgcttttaaaatgaaacGTCGCAGCTACAAGAAATGACAAGCTGAAAGGCACTGAAACATGATGGCAAAGTTAAACATCTTGCAGGAAACTTTTGAACATTTTACTAATGCATATGGTGGCTGACAACTCAAACATGTTACAAGTTAAGACATCACATCCAAATTAGAAAAAgacaaatatttagaaaataaataaataaaaacatctacaTTAGattaactacacacacacacacacacacacaaacattcttaGAGTCCTCACTGTTTGCAGAGCATTTCTCTGTGTGAGCATTTCTCTATGTGTGAGCATTTCTGCATGTGTGGTGCAGATTTGCATGCGTGTGTTAAACTATGAAGATGTTTTCtcagttgttagttttttttgtttgttttttttttctgtatgatATGAATTTTGCCCTGCATTGCTTTAGTGTTTTAGGGTTAGATTAACTTTTTGCAAAATGAATCATTATTTATGGATGTTTTGATTTTGATCTGGTTTTATTTTAGGATGCTAAGGAAGATCATGCAAAAGTGAAAACTAAGTCAtctgttaaaataattatttatgaaacgCTAAGTAATATTTCTGAGTTTTTGAAAAGAGCAATCAACCGAGCAACATCTTATTCCTATTTTGTTCCCCTGTATACTGTAATTTTTCTTAATTGAGAAATTTATCAAtgtttccttttaaaaaaaaaaaatgtgaaaaatgtgaaaaaaaatatatggttATGAATTGCTTTATggaaccttgatctctgctctgtcaacttttgatgttagaAATTCATCGCTACATTTTAACAGAGTGACTTTTGATTGACATTTTAGAAGTTTGAAAc

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052644 lncRNA upstream 332022 21422770 ~ 21597908 (+) True XLOC_025272
TCONS_00049883 lncRNA upstream 333263 21379057 ~ 21596667 (+) False XLOC_025272
TCONS_00049882 lncRNA upstream 534999 21378996 ~ 21394931 (+) False XLOC_025272
TCONS_00052643 lncRNA upstream 609445 21312584 ~ 21320485 (+) True XLOC_025271
TCONS_00052642 lncRNA upstream 678123 21245897 ~ 21251807 (+) True XLOC_025270
TCONS_00049888 lncRNA downstream 84690 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049890 lncRNA downstream 92392 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049895 lncRNA downstream 195694 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00052648 lncRNA downstream 206508 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049918 lncRNA downstream 685245 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049884 mRNA upstream 40314 21669545 ~ 21889616 (+) True XLOC_025273
TCONS_00049881 mRNA upstream 699262 21225750 ~ 21230668 (+) True XLOC_025269
TCONS_00049880 mRNA upstream 711797 21200763 ~ 21218133 (+) True XLOC_025268
TCONS_00049878 mRNA upstream 731186 21189766 ~ 21198744 (+) False XLOC_025267
TCONS_00049873 mRNA upstream 1468228 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049886 mRNA downstream 84438 22035863 ~ 22057600 (+) False XLOC_025275
TCONS_00049887 mRNA downstream 84688 22036113 ~ 22055493 (+) False XLOC_025275
TCONS_00049889 mRNA downstream 84966 22036391 ~ 22037717 (+) False XLOC_025275
TCONS_00049891 mRNA downstream 105684 22057109 ~ 22155532 (+) False XLOC_025275
TCONS_00049892 mRNA downstream 107641 22059066 ~ 22079846 (+) False XLOC_025275
TCONS_00049877 other upstream 899057 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 899059 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1249892 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049853 other upstream 2574992 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049893 other downstream 107888 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 617562 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 1284243 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1721952 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1742731 23694156 ~ 23696013 (+) False XLOC_025306

Expression Profile

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