RNA id: TCONS_00049886


Basic Information

Item Value
RNA id TCONS_00049886
length 6059
RNA type mRNA
GC content 0.42
exon number 20
gene id XLOC_025275
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22035863 ~ 22155532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGTTACTTCATTCAGtcgtttaataaaatgaatgcaaTTTTTTGCCATTCCGATTCGAACATCCTATTTATCTTATAACCTAACCTTGTTTACATGCTTTGCACATGTTTTCAGTTTTGCgttgttttttttctgccacaACCATGCGCGCGCAGCTTGCGGTGATGCAACCGTGACGTCGAACCCAAATTGGTCTATTTGAATCGGTTGTGTTCGGGTATTTCCGGATTCGCCGATAACGGTTGGAATGTTCAAATCTTCGATGCTAGTTTTGCTACTTCTGGCCTGAGTGGATACTGAGCTAAGAAAGCGACTGAAGAAGGAGCAAAGAAACCAAAAAAGGGGGAGAAGAGGAGCCTGGCTACGGAATGACGGTGTTGCAGGAACCTGTCCAGGCTGCTGTCTGGCATGCTCTGAACCACTACGCCTACCGAGATGCTGTATTCCTGGCAGAGAGGCTCTATGCTGAGGTCCATTCAGAAGAGGCACTCTTCCTGCTGGCCACGTGCTACTACCGTTCAGGGAAAGCATACAAGGCCTACCACCTGCTGAAAAGACACAGCTGTACTACACCACAATGCAAATATCTTCTTGCCAAATGCTGTGTGGAACTGAGCAAGTTGGCAGAAGGAGAACAGATCCTGACCGGAGGAGTTTTGAACAAACAGAAAAGTCAAGATGACATCATAACTGAGTTTGGAGACTCGGCCTGCTTCACTCTGGCATTGCTCGGACAAATTTACTGCAAAACTGATCGGATAGCAAAAGGAGCAGAATGTTACCAAAAGAGCATGAGCGAGAACCCCTTCTTATGGTCTCCATTCGAGTCATTATGTCAAATCGGGGAGCGGCCAGACCCGGAGCAAATCTTCAGATTGACCTCCTTGCAGAATTTTAGTGGAGGCAGTGGAGGAGGCATCCCTCCCTCTCCCATTAGCCCTGCGCACACACCTAGTAACAACATGGGACACAGACAAGTCGACACTGTCCTAATGGAGACCCCACAGGAAACTTTGgAGCAAAACCGACTCAATCTAGAATCTTCTAACTCCAAGTACTCTCTGAATACGGACTCCTCTGTGTCATACATCGACTCCTCCGTCATTTCGCCAGACTCTGTGCCACTGAGCAGTAGTGGCTCACTCTTATCCAAACAGGTTCAGAATAAACCCAAAAGTGGCCGCTGTCTACTGGGGGGCACAGCCACGCTCAGTCCCCTCACTCCAAGTTTTGGAATTTTGCCTCTGGAGCCAAGCCCAGGAGATCCAGCGTACCTGCAGAGTTATGGTCACAGTGGAACTGGGATGGAGCCACCTCCTGCGCCTGGCCCCCCAAAGAAGgCTGTCAGTAGAATCAGAACAGTGGGGACGAAGTCAGTGTTTGCACAAAGTGGCAACAGCAGAGAGGTCATTCCAAACCCCTTTATCCAAACTCAGACTACTGCTCCACAGACCAGTACTACACCGCAAGTGCTGAGCCAAACCATTGCTGCTCCCCCAAATGTGCAGCCACGGCGGAGCTCAAGACTCTTCACCAGTGCCAGCTCCACTGCCAAGGAGAACAGTAAGAAGCTGAAAATGAAGTTCCCCACCAAGATTCCTAACCGAAAGACCAAAACGAAAACGGAGGGCAAAGGCAACATCAGTTCACCGCAGTTCCAGGCTTTTAATCTACAAAAGGCTGCTGCAGACGGGCTGATGACCCTGATGCGGGATATTGGGAGGGGATATCTTGCTCTCTGCTCTTATAACTGCCGAGAGGCCATTAACATCTTGAGTCAGCTACCTTCACACCATTACAACACGGGCTGGGTGCTGGGTCAGATCGGGCGAGCACACTTTGAACTGGCTGAATACATGCAGGCGGAGAGGATTTTTTCAGAAGTCCGACGTATAGAGAGCTATCGAGTAGAGGGTATGGACATCTACTCAACAACACTTTGGCATTTACAAAAGGATGTGGCACTTTCTGCCCTATCTAAAGACCTCACTGACATGGACAAAAACTCACCTGAGCCCTGGTGTGTAGTTGGTAACTGTTTCAGCTTACAGCGGGAGCATGACATCGCCATTAAGTTCTTCACACGGGCCATCCAGGTGGACCCCAGCTTTGCTTACGCTTATACACTATTAGGGCATGAACTGGTTCTCACAGAGGAGCTGGAGAAAGCCCTGGGTTGCTTCCGCAATGCTATACGCCTCAATAAACGTCACTACAATGCCTGGTATGGCTTGGGAATGATTTATTATAAGCAGGAGAAGTTTAATCTAGCCGAGATTCATTTCAAGAAAGCTTTTAGCATCAATCCTCAGAGCTCTGTGCTACTCTGTCATATCGGAGTGGTTCAACATGCTTTGAAGAAATCAGACCATGCACTGGAGACCCTTAACAGAGCCATTAGCATCGACCCTAAGAATCCGCTATGCAAATTCCATAGGGCCTCAATTCTGTTTGCCAATGAAAAGTACAAGGCGGCTCTGCAGGAGCTTGAAGAGCTGAAACAAATAGTGCCCAAAGAGTCCCTTGTTTACTTCTTAATAGGAAAGGTCTATAAGAAGCTTGGCCAGACTCATCTGGCATTAATGAACTTTTCCTGGGCCATGGACTTGGACCCCAAAGGGGCCAATAATCAGATCAAAGAGGCCATAGATAAGCGATACCTCCCAGATGATGATGAGCCTGTCACTCCTGATGACTATCCCTACTGCTCAACGGAGGTGGAGGAATCACAGGAGAGCAGTATGACGGACGCTGACGACACTCAGCTCCACACGACGGAGAGCGACGAGGTTCTCTAGCCCCCTGACACCACTCTGGACTTTCAAATAATGCCAATTTGGGGGCTATTCGAAGACTccagctcaaaaaaaaaacaggaggaagaagaaaaaaggaaaacaaactgCTGCTAATAACAGTACCTCCTcatttttgtcatttcattttcttcattCGTTCTTGCCTTTTTTCCCACCCTCCCCCACCTCTTGTCGTCATGCCTTAGAGGTCTCTCATCGGTCTGATCTTCTGGTCCTGTCTCATCTCCTATCACAACTGGCAGGTGTCCTTTTATCACAGACACAGTCGCTTGAACAATTCAAGTTCTGCCTGAGCTCAAATTGCCCAGATTTGCCCATGACTCCACCGTCTTCTCAACAGGCTAATTGACTTACTTAACTTCACACAGCTCCACAGACTTTCATGGATGTACCTGTCTTAATGCTTAGGCATTTCATGTTATTTTATCGACATTTACCCTGAATAAAGACTTGTGCAAGAGTTGGTAGTCCTTTAATTCCTCTCCCCTCCCTGTCACATCTTGAAAGTGCCGGGAGAGAAGAAAAAAGCACTTTCTGCCCACATCAAAAGTTTGGCATGAGATTCATCTGCTAATCTTTCAGATTGCCATCTGTTagatgggaaaaaaaaacaaagttaactGTAGAAACAGCTAGTTCTGAATGATATGGATTGATCTGGATTTTGTTTGAGCAATTGTCAAATACTGTTAGTGTTAAACTGAACAATTTGCCTCACACTCATGTTTCGCTCTAAGTGATGTCAACTTTCAAACACCTGAAtcatatttgattattattttgccCAGCTGCAAGACATCGATCAGAgaattttgtttaaattgttaTCTTTACTGTGAAACCACTCTAGAGTGTCCAAATGAATTACCCTATTGTATGGCACAGTGACCAGTGGTCAGACTTCATGAGACAATATACTGAAATGTTGGTGCTGTTGAGGACAATACTGATGAACATAGTAAATGTGCACAAAGTATCTTCATGGTTTTTATTTTACCagaacatgtttattattatgaaatGTTTTTGATCTCTGCTAAATGCTTCTTATTGTACATTTTAAGAAATTATGTACAATTAAGGTAATAGAATAAACAACTTTGACTGAAGGCCCTGATGTGATCATTGAGGTAACAGAAACCTCTGTGCGCCAATTAATAACGCTTTAGAAGTGCATTGATTGTTAAAATCATCATTGTTTACACGCTATTGCCATGTCTGCCCCAGTTGCTGATGCTATGAAAACGACGACTATAAAGTGGTCTTCCTTCTGTGCGCGATGAACGAAGGCTTCGGTATTGATAAATTGATTCTAGATGTTACTACTATATTGATAATGTCTAATGATATTCATTTATTTCCATATACAAGCGTTGACGTTAATAAATTCGCTTGCGAGAATGACAACAGAAAACAAAGAAACTGATATTAAACTATAATATGTTTTGTATGTTCAGACGTGACTGTATGTTGGCTACGTGCACATTTAGCACACGATGGCTTAGAACACATAAACAAAAATCAACTCTTGTTGCAAAGTTACAGTTTTTTACTTTCACCCGTAAGCCGATCTCTTGCTAAAAAACACACGAAGCAGCCAATCAGCTGCTGCCTTTCCTCCTATGGACCAATCAGCGGTTGAAATGAGGCAGTATTTCCGGCTCAAGTCTGGTTGATCTGTGCAGGTAAGTGAACGTGAATTCTGTACTCTGTCATTTGAAATGTACTTCTTTTCGCTTTTTTAGTATGGGCAAAATATCGCTTTCAGCGTAAAATGTTGATTAAAGTCTAGAGGAAAACGTTGTTTCATTTTTCTTCTCATTTAGCGTGCGGTAGACGTTATGACAAAGTAATTTCATCCCGGAGATTGCAGTCAACAGGCCAAAAATTGTTTGGGTTCAAAAAAATCTCTCGCTCTTTCAGAATTAACCTACAAAAAAAGATAACCATTACAAAATTTGTTTTTTACTGTAGGTTACAAGTGAGAATGCTAGCTAAACATTTATCCGTTTAATTCGTCTTCAAGATGTGAGGGGTGATGAAAGAAAGGCTGTAATACAGCAGAGACTATCAGCTGATGATGTTAGCATGCTAAACCTACAGCGACCGGGCCAATGAGTTAAACAAATTAACAGCggactttattttaaaactaatttaaagaaCGACAATAGTTATACTATTATTCATAATCTCCCATTTCCTTGCTTTACAAGTTTTTATTTACGTATTGAATTTGTACGTTAGTGGTTCTGGTTCAAAACCTGGAAAGCTGCCTAACTAGATAGCATACTGAAATGCTCACTAGATAGGTAACGTTAACTTACCTTACGTGTTTTTGAAATAAAACGTAGCTTCATCCTTAGATGCTAGTGTTTTGTTTTGGATTTGGTTTGTTAGTCTTGTTTAATTGTTCCTCGTATTGTGTTAACATGTTATCGATCTATTAAGCACTGTTAACTTTAGTTTATGTGCTTTCTTCTGTTATTGTCTTTTGACAGTAACGTTATACGTTTACAACTAATACAACTCTAGTCTATATaggctatttttaatttttatttttgttatattttatttcgcATTCTGACATCATAAAACACCTATTTAAAAAATCCAGAGTAAAACTAGAGTCTAAAAACACCTGGtgacatttttttcattaaaaaatgacAACGGTGTCTTAAAAATGCAAATGCTATTGTAAACATTTTgtgctaataatatttaataataaatgtatatgtaaatagtttattttttcttctcttttttttgtacAGATTGCAGATTGAATCACTGTCTTCACTTTGGAGTTTGCAAGCAACATTTGGATTAATAATGGAGATTCCAGAAACTTGTCAGATTGGACTGAAACCAGTCGTCTTCAAGGTCTGACACTCTTTCTATGTTATGTCTGTGTATCTACATCTGTTTTAGGACATTTAGTTGTAATGTTGCATACATTAATATACTACGGGATGTCCCTGTAGAATAAATTCTCTATCTGGGGGAAAAAACTGTACCACAGAAGACAATCccttttaaacagtagatggcgctctctttttatttattgatatcaTTGGATACCTTGTTATTTGCTTTTTACCAGTGTGTTCAGCATATTCGATTTAACTTCACTTTTTGATTTGGGTTTCTATTTGGTGTTaacttttaatttagtttttcttaaGAACTTAATCAAAACAGAGAGTCTAAAATTCATAAATTTAT

Function

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051301 cell division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation
ko05166 Human T-cell leukemia virus 1 infection
ko01009 Protein phosphatases and associated proteins
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-990706-2 Predicted to be involved in cell division; cellular protein metabolic process; and regulation of mitotic sister chromatid separation. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Orthologous to human CDC27 (cell division cycle 27).

Ensembl:

ensembl_id ENSDART00000177169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052647 lncRNA upstream 38305 21929930 ~ 21997558 (+) False XLOC_025274
TCONS_00052645 lncRNA upstream 84438 21929928 ~ 21951425 (+) False XLOC_025274
TCONS_00052646 lncRNA upstream 84438 21929930 ~ 21951425 (+) False XLOC_025274
TCONS_00049885 lncRNA upstream 84438 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00052644 lncRNA upstream 437955 21422770 ~ 21597908 (+) True XLOC_025272
TCONS_00049895 lncRNA downstream 89519 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00052648 lncRNA downstream 100333 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049918 lncRNA downstream 579070 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 710634 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 788736 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00049884 mRNA upstream 146247 21669545 ~ 21889616 (+) True XLOC_025273
TCONS_00049881 mRNA upstream 805195 21225750 ~ 21230668 (+) True XLOC_025269
TCONS_00049880 mRNA upstream 817730 21200763 ~ 21218133 (+) True XLOC_025268
TCONS_00049878 mRNA upstream 837119 21189766 ~ 21198744 (+) False XLOC_025267
TCONS_00049873 mRNA upstream 1574161 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049892 mRNA downstream 1466 22059066 ~ 22079846 (+) False XLOC_025275
TCONS_00049894 mRNA downstream 21619 22079219 ~ 22152746 (+) False XLOC_025275
TCONS_00049896 mRNA downstream 184669 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA downstream 212863 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA downstream 215523 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049877 other upstream 1004990 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1004992 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1355825 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049853 other upstream 2680925 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049893 other downstream 1713 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 511387 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 1178068 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1615777 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1636556 23694156 ~ 23696013 (+) False XLOC_025306

Expression Profile

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