RNA id: TCONS_00049892


Basic Information

Item Value
RNA id TCONS_00049892
length 1098
RNA type mRNA
GC content 0.56
exon number 2
gene id XLOC_025275
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22035863 ~ 22155532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGCCGCCATTTTCCGAGCTCGTCGCTTCCCCCCTCGAACGACAACAATAAAAAACGGACAAAAGCGAGCTTTTCTCTGGCCAAATTGACCACGAAGACCTTTCGGAGAAGGAGAGAAGCGATCGCGGCCAAAGAACGACCGGAAAAAGGATACATTTCTCTGTTTTTACGTGGCTTTTGTCGGGGGCGATTGAAAAACAGCCGACTGGGCTCCTATAGCTCCACTGCCCCCGTTTCTTTCGCCCATTTCGTGATTCCTAAACGCAGCCCGGAGGAGtgggaggaggaagaggagggggTTACCGAACACCGGAGCGCGCGAGAGGCCGGGGATTTTTCCACCTGGACGTGCAACAGCGGAATCTGCATCTGGATAATTGCTTCAGCCTGTCACATTATTACTACTATTTGTCTCAAGCGCGGGGATTCATTACATTAATTTCCCCCGGAATCGGCTCCCCATCACGTGGCTGCCCCCTGGCACAGTGGTAGGAGGGTGGTGTGGAGCTGGCCTCAGCACCGGGAGAGGCCCCCTCGCCCGCCCCCTCCCAGCGCTGCATGGCTGCAATGGCGCCCGCTCTGACCGACGCACCGGCCGAAGCTCACCGCATACGCTTCAAACTGGCTCCGCCTTCCTCCACCCTCTCCCCAAGCGGCGTGGAGGGAAGCGGTACCACCAATCACATTCTTGTTTCTAGTAACGGCACCGTCAAGCGCAAAGCTTCAGAGGAGCGCCCCTCCCGTGGGGCTGGCCCCTGCAAGCCCCTTGTTACCTCATATCACTGTTCAGATGACAAATTGCAAGGTGTTTTACTGCAGACGCACAGCATCCTACCAAGCCTCATACCACGCAAACACCAGGCTTTAGAGCTGTCCGAGGAGCAGCTTAAGAGCATCATGAGTGCCGGTGGAGGAGGCGGACCCACTGTCCAAAGCCCCACTGTCAATGGCGTGGCAAAGAAAGTGACTAAACCCTCTGACCGAGACAATGCGGTGACCTTAAATGGTGGCCAACATAACGTCAAGCAGGATTTGTCAAATCAGGCTCAAATTGTCAACTCCACTAGGGGAATGACAAGGAACGGGCCACATCGAGA

Function

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051301 cell division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation
ko05166 Human T-cell leukemia virus 1 infection
ko01009 Protein phosphatases and associated proteins
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-121219-4 Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Human ortholog(s) of this gene implicated in Koolen de Vries syndrome. Orthologous to human KANSL1 (KAT8 regulatory NSL complex subunit 1).

Ensembl:

ensembl_id ENSDART00000155739

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049890 lncRNA upstream 12495 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 21154 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00052647 lncRNA upstream 61508 21929930 ~ 21997558 (+) False XLOC_025274
TCONS_00052646 lncRNA upstream 107641 21929930 ~ 21951425 (+) False XLOC_025274
TCONS_00049895 lncRNA downstream 67273 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00052648 lncRNA downstream 78087 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049918 lncRNA downstream 556824 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 688388 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 766490 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00049886 mRNA upstream 1466 22035863 ~ 22057600 (+) False XLOC_025275
TCONS_00049887 mRNA upstream 3573 22036113 ~ 22055493 (+) False XLOC_025275
TCONS_00049889 mRNA upstream 21349 22036391 ~ 22037717 (+) False XLOC_025275
TCONS_00049884 mRNA upstream 169450 21669545 ~ 21889616 (+) True XLOC_025273
TCONS_00049881 mRNA upstream 828398 21225750 ~ 21230668 (+) True XLOC_025269
TCONS_00049896 mRNA downstream 162423 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA downstream 190617 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA downstream 193277 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049899 mRNA downstream 247892 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049900 mRNA downstream 254166 22334012 ~ 22371477 (+) False XLOC_025279
TCONS_00049877 other upstream 1028193 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1028195 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1379028 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049853 other upstream 2704128 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049913 other downstream 489141 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 1155822 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1593531 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1614310 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1640805 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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