RNA id: TCONS_00049895


Basic Information

Item Value
RNA id TCONS_00049895
length 695
lncRNA type retained_intron
GC content 0.51
exon number 3
gene id XLOC_025275
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22035863 ~ 22155532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCATGTCTGTGGCCGCCACGACCCGAGTGGAGAAGCTACAGTACAAAGAGATTCTCACCCCAAGCTGGCGAGAAGTGGACGTTTTTGCCAAGCCCATCGCTGAAGAGGATGATGCAGTGGAGGTCGAGGATCTCTCTGATGTCACTTTCTCCCAGCTTCACCTTCCATTACAGGAGCAAGAGCGCTCTCGCTGGAGTTGGACTGCCAGCAACATCGCAAAGAGGAGAGGCAGCAGGTGGGAAACAGAACTTAAACTAGTTTTTATCCTTTTTAAGTGATGAGCGCAACTCTTTTCATCTGATGAACAACTTTGTGGTGTGTAGCTGACTGCTGATTTTTGCACTTCATGATGGCAGCTGATCTGTTGAAAGAAAGCTGGCACTTTTAAACTCCAGAGATTAAAGTTGCTGCACAAAATGACAACAGGCTGGTCGCTTGCAACAGTGTTACGAGAAGTTATTAAGCAACGGACATTACAGAAATGTCGCATGGTAATATTTTTCTCCACAGGTCATACAAGTCTGTGGATGGACGGACAACCCCCTTACTGTGCGGCACCAACCCCTCCACACCACAGCCCTCGTCTCCAGACACGCCGCATTTCCACCTGCTGCATGAGTACAGCTCAGTGGCGTCTCCCACCAGCCCAGCCAGCCCAGAGATGCTGATGCTGACCGGCCTGCACACACCGGCC

Function

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051301 cell division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation
ko05166 Human T-cell leukemia virus 1 infection
ko01009 Protein phosphatases and associated proteins
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-121219-4 Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Human ortholog(s) of this gene implicated in Koolen de Vries syndrome. Orthologous to human KANSL1 (KAT8 regulatory NSL complex subunit 1).

Ensembl:

ensembl_id ENSDART00000154620

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049890 lncRNA upstream 100548 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 109207 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00052647 lncRNA upstream 149561 21929930 ~ 21997558 (+) False XLOC_025274
TCONS_00052645 lncRNA upstream 195694 21929928 ~ 21951425 (+) False XLOC_025274
TCONS_00052648 lncRNA downstream 7111 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049918 lncRNA downstream 485848 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 617412 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 695514 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 695561 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049892 mRNA upstream 67273 22059066 ~ 22079846 (+) False XLOC_025275
TCONS_00049886 mRNA upstream 89519 22035863 ~ 22057600 (+) False XLOC_025275
TCONS_00049887 mRNA upstream 91626 22036113 ~ 22055493 (+) False XLOC_025275
TCONS_00049889 mRNA upstream 109402 22036391 ~ 22037717 (+) False XLOC_025275
TCONS_00049884 mRNA upstream 257503 21669545 ~ 21889616 (+) True XLOC_025273
TCONS_00049896 mRNA downstream 91447 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA downstream 119641 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA downstream 122301 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049899 mRNA downstream 176916 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049900 mRNA downstream 183190 22334012 ~ 22371477 (+) False XLOC_025279
TCONS_00049893 other upstream 86031 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1116246 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1116248 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1467081 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049853 other upstream 2792181 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049913 other downstream 418165 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 1084846 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1522555 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1543334 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1569829 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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