RNA id: TCONS_00052648


Basic Information

Item Value
RNA id TCONS_00052648
length 953
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_025276
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22157933 ~ 22162482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAACTAGGCTACACCTGACCAAACGATGTTGCATCCGTTTGTTTCACGAGAAAACGAGACCAAAAGTAAAACAAAGGACAGGTAAAGCAGTTTAATACGGACTTTATTTCCAAATTCACGTTTACAGCAAGGAGTATCAGTGTAAaccaattaataaaacacattacgaTAAGGACAATCACAACTGTCAAGCTAGAATGAGGAACCGCGATGAGAAGAGCAGAGGCGGGAAATGAAACTGAGGAGAAAAGTAGCCGGAAAGCTCACAGGCCTTGTTTAGCAAGGGAGGCCGAGACCTGATCAGCCAGTGTGGACAGTTGTGGGGAGTCGGTCATGTTGAGGCTGCCGGAGGAAGACACGTTGCTGAGGCGGCGAGGGGATCCGTCCGTGGAAATGTCAGGGGACTTGCAGACGATGTCAGCACCGTGGTCAGTGCGCGCTTTGGCTTGATCACGGAAATTTAGCTTGTGGCTCTCAATCTGATGGGAGAAAAGGTGGAATTTGTATTAAGTTTGATGAACATCAACagattttgcaaacaaaaaaaaaacaaataaatcaggTGAATTCAGGACAGTTGTCACTCTAAATCAGAAAAAATGAAGCAtcccaccaagcaattttgttTATGGATGTTAAATGTggatgtcttggctaaaacaaagctacAGTAAAGTACTCTGTTTTGACTATTGTTTGACATGTTAGATTTTCAATGAGAGCCCAGATTTAGACTTCTTTTAGCCAAGGcatctatgtttagacgtctatttgAATTCttttagacataaaaaaaaaatgcttgcttggATTATATATGATACATTAACAACATTATATATGATACATTATCTatgataaattaacaaaagaaaattgtTCTTTAAAAAACGGACTGCGTCCTGACCGCAGTCACTATTCTAtgttgtactgtaaataaatctaaataat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049895 lncRNA upstream 7111 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 111362 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 120021 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00052647 lncRNA upstream 160375 21929930 ~ 21997558 (+) False XLOC_025274
TCONS_00052646 lncRNA upstream 206508 21929930 ~ 21951425 (+) False XLOC_025274
TCONS_00049918 lncRNA downstream 474188 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 605752 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 683854 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 683901 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 692191 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049891 mRNA upstream 2401 22057109 ~ 22155532 (+) False XLOC_025275
TCONS_00049894 mRNA upstream 5187 22079219 ~ 22152746 (+) False XLOC_025275
TCONS_00049892 mRNA upstream 78087 22059066 ~ 22079846 (+) False XLOC_025275
TCONS_00049886 mRNA upstream 100333 22035863 ~ 22057600 (+) False XLOC_025275
TCONS_00049887 mRNA upstream 102440 22036113 ~ 22055493 (+) False XLOC_025275
TCONS_00049896 mRNA downstream 79787 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA downstream 107981 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA downstream 110641 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049899 mRNA downstream 165256 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049900 mRNA downstream 171530 22334012 ~ 22371477 (+) False XLOC_025279
TCONS_00049893 other upstream 96845 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1127060 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1127062 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1477895 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 2808116 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 406505 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 1073186 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1510895 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1531674 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1558169 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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