RNA id: TCONS_00049900


Basic Information

Item Value
RNA id TCONS_00049900
length 549
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_025279
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22334012 ~ 22380787 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGATATGTGgcaaTTTATTGCAAAatttttatgtaaccgtttatttTTTGCTggaGTTTGGTCATTGCCAACAAACTGCAATCTTCAGAAAAACTTAATGAAGAGGACCTATACACTTCTGGAGACTGCGGGAGGGCTTTTCCCTATGCAATGCCTGGACGACCGCGTTTCTATACCATTCCCGCAAAATGTGTTCGAGTATAACGAGGATCAGaaggttactGGTGTTGAAAAAGCTGTTTATCAGACACTCCAGAACATTGACGCATTGTTTGAGAACTTCGGTGATCCGGACCAGTGGGATGCAGAGAAACTGGATGACTTTAGAGGCATCGTATATCGGCAGATTAAATACAGCACATGCATACAGATCATGAACAAGACTGAAGTGGCTCAGGATTTTCCCAGCAGAGAGGCTTCGCTCAAGGTTTACTTTGAGACAATATCCTCGACTCTGAAAGAAAAGAATTCCAGTTACTGTGCTTGGGAAATTGTGAGAAatgaattgctcagAATACTAtgtgatgtcatcCAGCCGGCTGTGTAA

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0009615 response to virus biological_process
GO:0051607 defense response to virus biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071128-2 Predicted to enable cytokine activity and cytokine receptor binding activity. Acts upstream of or within defense response to virus. Predicted to be located in extracellular space. Is expressed in head kidney and spleen. Human ortholog(s) of this gene implicated in several diseases, including COVID-19; Crimean-Congo hemorrhagic fever; common cold; hepatitis B; and liver disease (multiple). Orthologous to several human genes including IFNA10 (interferon alpha 10); IFNA14 (interferon alpha 14); and IFNA16 (interferon alpha 16).

Ensembl:

ensembl_id ENSDART00000193526

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 171530 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 183190 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 287441 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 296100 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 382587 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 265193 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 396757 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 474859 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 474906 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 483196 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049899 mRNA upstream 1099 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049896 mRNA upstream 17168 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA upstream 17168 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA upstream 17194 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049891 mRNA upstream 178480 22057109 ~ 22155532 (+) False XLOC_025275
TCONS_00049906 mRNA downstream 4119 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049905 mRNA downstream 4119 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049907 mRNA downstream 5835 22377312 ~ 22421935 (+) False XLOC_025281
TCONS_00049908 mRNA downstream 10478 22381955 ~ 22422169 (+) True XLOC_025281
TCONS_00049909 mRNA downstream 55237 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049893 other upstream 272924 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1303139 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1303141 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1653974 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 2984195 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 197510 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 864191 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1301900 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1322679 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1349174 23720651 ~ 23720745 (+) True XLOC_025311

Expression Profile

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