RNA id: TCONS_00049902


Basic Information

Item Value
RNA id TCONS_00049902
length 165
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_025279
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22334012 ~ 22380787 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCAGAAGAGGCTTCGCTCAAGGTTTACTTTGAGACAATATCCTCGACTCTGAAAGAAAAGAATTCCAGTTACTGTGCTTGGGAAATTGTGAGAATTGTGGTTAAAGgcagcacattaaggatggatattaaatgcagaaacgcaaATGTGAGACCTAGACTC

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0009615 response to virus biological_process
GO:0051607 defense response to virus biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071128-2 Predicted to enable cytokine activity and cytokine receptor binding activity. Acts upstream of or within defense response to virus. Predicted to be located in extracellular space. Is expressed in head kidney and spleen. Human ortholog(s) of this gene implicated in several diseases, including COVID-19; Crimean-Congo hemorrhagic fever; common cold; hepatitis B; and liver disease (multiple). Orthologous to several human genes including IFNA10 (interferon alpha 10); IFNA14 (interferon alpha 14); and IFNA16 (interferon alpha 16).

Ensembl:

ensembl_id ENSDART00000191274

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052648 lncRNA upstream 183015 22157933 ~ 22162482 (+) True XLOC_025276
TCONS_00049895 lncRNA upstream 194675 22147119 ~ 22150822 (+) True XLOC_025275
TCONS_00049890 lncRNA upstream 298926 22043817 ~ 22046571 (+) False XLOC_025275
TCONS_00049888 lncRNA upstream 307585 22036115 ~ 22037912 (+) False XLOC_025275
TCONS_00049885 lncRNA upstream 394072 21929942 ~ 21951425 (+) True XLOC_025274
TCONS_00049918 lncRNA downstream 274945 22636670 ~ 22726420 (+) False XLOC_025284
TCONS_00049919 lncRNA downstream 406509 22768234 ~ 22776470 (+) True XLOC_025284
TCONS_00052336 lncRNA downstream 484611 22846336 ~ 22848196 (+) False XLOC_025285
TCONS_00052649 lncRNA downstream 484658 22846383 ~ 22848196 (+) True XLOC_025285
TCONS_00049920 lncRNA downstream 492948 22854673 ~ 22880447 (+) True XLOC_025286
TCONS_00049901 mRNA upstream 4391 22335030 ~ 22341106 (+) True XLOC_025280
TCONS_00049899 mRNA upstream 12584 22327738 ~ 22332913 (+) True XLOC_025278
TCONS_00049896 mRNA upstream 28653 22242269 ~ 22316844 (+) False XLOC_025277
TCONS_00049897 mRNA upstream 28653 22270463 ~ 22316844 (+) False XLOC_025277
TCONS_00049898 mRNA upstream 28679 22273123 ~ 22316818 (+) True XLOC_025277
TCONS_00049906 mRNA downstream 13871 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049905 mRNA downstream 13871 22375596 ~ 22422169 (+) False XLOC_025281
TCONS_00049907 mRNA downstream 15587 22377312 ~ 22421935 (+) False XLOC_025281
TCONS_00049908 mRNA downstream 20230 22381955 ~ 22422169 (+) True XLOC_025281
TCONS_00049909 mRNA downstream 64989 22426714 ~ 22432428 (+) False XLOC_025282
TCONS_00049893 other upstream 284409 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049877 other upstream 1314624 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049876 other upstream 1314626 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049874 other upstream 1665459 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049854 other upstream 2995680 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049913 other downstream 207262 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 873943 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 1311652 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 1332431 23694156 ~ 23696013 (+) False XLOC_025306
TCONS_00049958 other downstream 1358926 23720651 ~ 23720745 (+) True XLOC_025311